Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 13 Aligned Residues 361 % Identity 21% Template c2pljA_ PDB info PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus Resolution 1.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																															.	.	.
Query SS confidence																.	.	.																															.	.	.
Query Sequence		H	S	L	F	S	T	D	T	D	L	T	A	E	N	.	.	.	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S
Query Conservation																.	.	.																															.	.	.
Alig confidence																.	.	.																															.	.	.
Template Conservation
Template Sequence		Q	S	I	F	D	I	H	P	V	L	S	A	E	E	I	H	L	I	E	A	S	V	E	Q	F	G	A	P	L	L	L	L	D	C	D	V	I	R	Q	Q	Y	R	A	L	K	N	A	L	P	N	V	T	L	H	Y	A	L	K	P	L	P	H	P	V	V	V	R	T	L	L	A	E	G	A	S	F	D	L	A	T
Template Known Secondary structure					S																							S	S																				S	T	T							S	T	T														T							S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T
Query Conservation																																											.
Alig confidence																	.	.	.	.																							.																														.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Sequence		T	G	E	V	E	L	V	A	S	E	G	V	P	A	D	.	.	.	.	L	T	I	H	T	H	P	I	K	R	D	A	D	I	R	D	A	L	A	Y	G	C	N	V	F	V	V	D	N	L	N	E	L	E	K	F	K	A	Y	R	D	D	V	E	L	L	V	R	L	S	F	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T			G	G	.	.	.	.	G						S	S													T								S						T	T	G	G	G	T	T	T							B				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	.	.	.	.	.	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V
Query Conservation																																																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																							.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	K	K	F	G	C	S	P	E	Q	A	L	V	I	I	E	T	A	K	E	W	N	I	R	I	K	G	L	S	F	H	V	G	S	Q	T	T	N	P	N	K	Y	V	E	A	I	H	T	C	R	H	V	M	E	Q	V	V	E	R	G	L	P	A	L	S	T	L	D	I	G	G	G	F	P	V
Template Known Secondary structure		.	.	.	.	.	.			S		B															T	T												T	T				T																				T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M
Query Conservation
Alig confidence				.	.																						.	.	.	.
Template Conservation				.	.																						.	.	.	.
Template Sequence		N	Y	.	.	T	Q	Q	V	M	P	I	D	Q	F	C	A	P	I	N	E	A	L	S	L	L	.	.	.	.	P	E	T	V	H	V	L	A	E	P	G	R	F	I	C	A	P	A	V	T	S	V	A	S	V	M	G	Q	A	E	R	E	G	Q	I	W	Y	Y	L	D	D	G	I	Y	G	S	F	S	G	L	M
Template Known Secondary structure			S	.	.	S	S																	T	T	S	.	.	.	.		T	T													G	G	G														T	T							S			T	T	T	G	G	G
Template Predicted Secondary structure				.	.																						.	.	.	.
Template SS confidence
		239	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P
Query Conservation
Alig confidence																	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		F	D	D	A	R	Y	P	L	T	T	I	K	Q	G	G	.	.	.	.	.	E	L	I	P	S	V	L	S	G	P	T	C	D	S	V	D	V	I	A	E	N	.	.	.	.	.	.	.	I	L	L	P	K	L	N	N	G	D	L	V	I	G	R	T	M	G	A	Y	T	S	A	T	A	T	D	F	N	F	F	K
Template Known Secondary structure			S									S			S	S	.	.	.	.	.										S	S	S		T	T							.	.	.	.	.	.	.								T	T						S	S		S	S	S	S	G	G	G				G	G	G
Template Predicted Secondary structure																	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.								.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		391	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	E	V	L	F	D	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	Q	T	I	A	L	N	E	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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