Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 6 Aligned Residues 380 % Identity 33% Template c2p3eA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus Resolution 1.99 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure															.	.																																		.	.	.
Query SS confidence															.	.																																		.	.	.
Query Sequence		M	P	H	S	L	F	S	T	D	T	D	L	T	.	.	A	E	N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V
Query Conservation															.	.																																		.	.	.
Alig confidence															.	.																																		.	.	.
Template Conservation
Template Sequence		Y	N	P	Y	L	E	Y	R	D	G	E	L	F	I	E	G	V	S	L	K	E	L	A	Q	T	F	G	T	P	L	Y	V	Y	S	S	N	F	I	K	E	R	F	E	A	Y	R	K	A	F	P	D	A	L	I	C	Y	A	V	K	A	N	F	N	P	H	L	V	K	L	L	G	E	L	G	A	G	A	D	I	V
Template Known Secondary structure				T	T					T	T					T	T												S	S																				S	T	T	S						G	G	G													T	T						S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K
Query Conservation																																												.
Alig confidence																		.	.	.	.																							.																																	.	.	.	.	.
Template Conservation																		.	.	.	.																																																								.	.	.	.	.
Template Sequence		S	G	G	E	L	Y	L	A	K	K	A	G	I	P	P	E	.	.	.	.	R	I	V	Y	A	G	V	G	K	T	E	K	E	L	T	D	A	V	D	S	E	I	L	M	F	N	V	E	S	R	Q	E	L	D	V	L	N	E	I	A	G	K	L	G	K	K	A	R	I	A	I	R	V	N	P	.	.	.	.	.
Template Known Secondary structure		S										T	T			G	G	.	.	.	.	G					S	S													T	T		S																					T												.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.																																																								.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.																						.	.	.	.
Query SS confidence																													.																						.	.	.	.
Query Sequence		T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	.	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S
Query Conservation																													.																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.																					.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	K	F	G	V	D	I	R	E	A	Q	K	E	Y	E	Y	A	S	K	L	E	N	L	E	I	V	G	I	H	C	H	I	G	S	Q	I	L	D	I	S	P	Y	R	E	A	V	E	K	V	V	S	L	Y	E	S	L	T	Q	K	G	F	D	I	K	Y	L	D	I	G	G	G	L	G
Template Known Secondary structure		.	.	.	.	.	.	.			S				G	G	G										T		T	T												S	S	B	S	S		T																			T	T												B
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		I	K	Y	K	P	E	D	K	E	P	A	P	Q	D	L	A	D	L	L	.	.	.	.	.	.	.	.	K	D	L	L	V	K	A	K	I	I	L	E	P	G	R	S	I	M	G	N	A	G	I	L	I	T	Q	V	Q	F	L	K	D	K	G	S	K	H	F	I	I	V	D	A	G	M	N	D	L	I	R	P	S
Template Known Secondary structure					S	T	T														.	.	.	.	.	.	.	.	T	T	T				S							S					G	G	G														T	T							S			T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Sequence		I	Y	N	A	Y	H	H	I	I	P	V	.	.	.	.	.	.	.	.	E	T	K	E	V	V	A	D	I	V	G	P	I	C	E	T	G	D	F	L	A	L	D	.	.	.	.	.	.	.	R	E	I	E	E	V	Q	R	G	E	Y	L	A	V	L	S	A	G	A	Y	G	F	A	M	S	S	H	Y	N	M	R
Template Known Secondary structure												S	.	.	.	.	.	.	.	.	B											S	S	S	S	T	T							.	.	.	.	.	.	.								T	T							S		T	T	T	T	G	G	G				G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.									.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.								.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	P	E	V	L	F	D	N	G	Q	A	R	L	I	R	R	R	Q	T	I	E	E	L	L	A	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	A	A	E	V	L	V	E	N	G	S	V	K	L	I	R	K	R	E	N	Y	D	Y	I	V	E	P	S	L
Template Known Secondary structure											T	T																G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.