Return to main results Retrieve Phyre Job Id

Job DescriptionP00861
Confidence100.00%DateThu Jan 5 10:56:56 GMT 2012
Rank4Aligned Residues375
% Identity19%Templatec2on3A_
PDB info PDB header:lyaseChain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20. ........30.........40....... ..50.........60.........70...
Predicted Secondary structure 







.....




...





Query SS confidence 



















. . . . .

























. . .

























Query Sequence  PHSLFSTDTDLTAENLLRLP. . . . . AEFGCPVWVYDAQIIRRQIAALKQFD. . . VVRFAQKACSNIHILRLMREQGVKVD
Query Conservation                 
  
 .....   


  
 
   
  
   
    ... 
 





    

  
   
 
 
Alig confidence 



















.....

























...

























Template Conservation                 
   
         

 

 
   
  
      
 
   
 





    

  
   
 
 
Template Sequence  FDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFD
Template Known Secondary structure  S


TT

S

SS





TTGGG


T
Template Predicted Secondary structure 























Template SS confidence 















































































   910.........20.........30.........40.........50.........60.........70.........80........
 
   74.....80.........90.........100.........110....... ..120.........130.........140.........150..
Predicted Secondary structure 



















.














Query SS confidence 











































.


































Query Sequence  SVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQI. PVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHS
Query Conservation 


  

  
   
         

     
    
  
    
. 
 


  

  
        
 


         
Alig confidence 

















....





















.



























.......
Template Conservation 
 
  

  

  
    .... 

  

 
    
  

  

  
 


  

  
        
 


  .......
Template Sequence  CASKTEIQLVQSLGVPPE. . . . RIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT. . . . . . .
Template Known Secondary structure 
STTT

GG....G

SS

TTT


S
TT


.......
Template Predicted Secondary structure 







....

















.......
Template SS confidence 















































































   8990.........100...... ...110.........120.........130.........140.........150.......
 
   153......160.........170.........180.........190.........200.. .......210.........220........
Predicted Secondary structure 

























....









Query SS confidence 

















































. . . .

























Query Sequence  QKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLE. . . . QVCGAMVRQVIEFGQDLQAISAGGGL
Query Conservation           




                
 
 


 
 

        ....             
  
  





 
Alig confidence  .........








































....

























Template Conservation  .........




        
       
 
 


 
 

                         
  
  





 
Template Sequence  . . . . . . . . . VKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGF
Template Known Secondary structure  .........

S
B
TT



TT


STT








Template Predicted Secondary structure  .........


























Template SS confidence 















































































   168.170.........180.........190.........200.........210.........220.........230........
 
   229230.........240.........250.........260.........270.........280.........290.... .....300.......
Predicted Secondary structure 
























.







Query SS confidence 

































































.












Query Sequence  SVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRH. FVLVDAGFNDLMR
Query Conservation   
 
               
                
  



 


 

 


 
  

      .  
 
 
      
Alig confidence 



...






















.


































.












Template Conservation      ...      
     
          .     
  



 


 

 


 
   
          

 
      
Template Sequence  PGSE. . . DVKLKFEEITGVINPALDKYFPS. DSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLEQTFMYYVNDGVYGSFN
Template Known Secondary structure 

SS...SSSS
S
G.GG



STTT


S

TTTGGG
Template Predicted Secondary structure 



...







.

















Template SS confidence 















































































   239240.. .......250.........260..... ....270.........280.........290.........300.........310....
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  PAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYN
Query Conservation           
                   
 
  
   
 
            

 
  

 
 
   


  
    

Alig confidence 

















..























.......




























Template Conservation                    ..         
 
  
   
 
   .......  

 
  

 
 
   


  
 
  

Template Sequence  CILYDHAHVKPLLQKRPK. . PDEKYYSSSIWGPTCDGLDRIVER. . . . . . . CDLPEMHVGDWMLFENMGAYTVAAASTFN
Template Known Secondary structure  T




SS


..SS


SSS
TT
.......


TT

S

TTSGGG


GG
Template Predicted Secondary structure 









..










.......
















Template SS confidence 















































































   328.330.........340..... ....350.........360......... 370.........380.........390........
 
   388.390.........400 .........
Predicted Secondary structure 






.

Query SS confidence 












.








Query Sequence  SRPLLPEVLFDNG. QARLIRRRQ
Query Conservation      
  
 
  
.    


 
Alig confidence 












.








Template Conservation      
  
 
        



 
Template Sequence  GFQRPTIYYVMSGPAWQLMQQFQ
Template Known Secondary structure  G





Template Predicted Secondary structure 









Template SS confidence 






















   399400.........410.........420.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions