Job Description P00861 Confidence 99.94% Date Thu Jan 5 10:56:56 GMT 2012 Rank 43 Aligned Residues 281 % Identity 16% Template c2odoC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase Resolution 2.80 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.											.	.	.	.															.
Query SS confidence																							.											.	.	.	.															.
Query Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	D	V	V	R	F	A	Q	K	A	C	.	.	.	.	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F
Query Conservation																							.											.	.	.	.															.
Alig confidence																							.											.	.	.	.										.					.																					.	.	.	.	.
Template Conservation																																															.																										.	.	.	.	.
Template Sequence		P	A	R	A	L	I	D	L	Q	A	L	R	H	N	Y	Q	L	A	R	E	V	T	G	A	K	A	L	A	V	I	A	D	A	Y	G	H	G	A	V	R	C	A	Q	A	L	.	E	A	E	A	D	G	F	A	V	A	C	I	E	E	A	L	E	L	R	A	A	G	I	R	A	.	.	.	.	.	P	I	L	L
Template Known Secondary structure																									S												T										.	G	G	G		S					S	S										T	T			S	.	.	.	.	.
Template Predicted Secondary structure																																															.																										.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q
Query Conservation
Alig confidence																																										.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.											.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	G	F	F	E	A	D	E	L	P	L	I	V	E	H	D	F	W	C	V	V	H	S	L	W	Q	L	D	A	I	E	Q	A	R	L	A	K	P	I	.	.	.	H	V	W	L	L	D	S	G	M	H	.	.	.	.	.	.	.	.	.	.	R	V	G	L	H	P	N	D	Y	K	A	A	Y	Q	R	L	Q
Template Known Secondary structure		T	T			S	S	G	G	G							T	T							S										S			S	S			.	.	.							S	S	S		.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																										.	.	.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.											.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure			.																	.	.
Query SS confidence			.																	.	.
Query Sequence		R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A
Query Conservation			.																	.	.
Alig confidence			.																	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	A	N	V	A	K	I	V	L	M	S	H	F	A	R	A	D	E	L	D	C	T	R	S	V	E	Q	V	A	V	F	L	G	A	R	A	D	L	T	A	E	I	S	L	R	N	S	P	A	V	L	G	W	P	R	V	P	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S	S											S	S	T	T		S	S																T	T																	T	T	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																.	.	.	.	280	.	.	.	.	.	.	.	.	.																290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	W	V	R	P	G	L	M	L	Y	G	S	S	P	F	D	E	P	Q	A	T	A	S	R	L	Q	P	V	M	T	L	E	S	K	V	I	C	V	R	E	L	P	A	G	E	P	V	G	Y	G	A	R	F	I	T	P	K	P	M	R	I	G	V	V	A	M	G	Y	A	D	G	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.					S	G	G	G	G	T					S	S			T	T	G	G	G																			T	T		B		S	G	G	G			B		S	S								S			T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template Sequence		P	R	Q	A	P	T	G	T	P	V	F	V	.	.	.	.	.	.	.	.	.	.	.	.	D	G	V	R	S	Q	L	L	G	R	V	S	M	.	.	D	M	L	C	I	D	L	T	D	.	.	.	.	.	.	V	P	Q	A	G	L	G	S	T	V	E	L	W	G
Template Known Secondary structure			T	T			T	T						.	.	.	.	.	.	.	.	.	.	.	.	T	T					B		S				S	.	.	S							S	S	.	.	.	.	.	.		T	T			T	T							S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.													.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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