Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 3 Aligned Residues 396 % Identity 27% Template c2o0tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Resolution 2.33 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		D	T	D	L	T	A	E	N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		V	V	C	I	A	G	I	P	L	T	Q	L	A	Q	E	Y	G	T	P	L	F	V	I	D	E	D	D	F	R	S	R	C	R	E	T	A	A	A	F	G	S	G	A	N	V	H	Y	A	A	A	F	L	C	S	E	V	A	R	W	I	S	E	E	G	L	C	L	D	V	C	T	G	G	E	L	A	V	A	L	H
Template Known Secondary structure						T	T												S	S																				T	T	S	G	G	G	B																			T							S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																		.																				.	.	.	.
Query SS confidence																																		.																				.	.	.	.
Query Sequence		A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	.	.	.	.	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E
Query Conservation																																		.																				.	.	.	.
Alig confidence								.	.	.	.																							.																				.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		A	S	F	P	P	E	.	.	.	.	R	I	T	L	H	G	N	N	K	S	V	S	E	L	T	A	A	V	K	A	G	V	G	H	I	V	V	D	S	M	T	E	I	E	R	L	D	A	I	A	G	E	A	G	I	V	Q	D	V	L	V	R	L	T	V	G	V	E	A	H	T	H	E	F	I	S	T	A	H	E
Template Known Secondary structure		T	T			G	G	.	.	.	.	G						S	S													T		S						S															T												S						T						S	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		104	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.									.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																											.																	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.																											.																	.	.	.	.	.	.	.	.
Query Sequence		N	S	K	H	G	I	W	Y	T	D	.	.	.	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	.	.	.	.	.	.	.	.	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L
Query Conservation												.	.	.																											.																	.	.	.	.	.	.	.	.
Alig confidence												.	.	.																											.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	K	F	G	L	S	V	A	S	G	A	A	M	A	A	V	R	R	V	F	A	T	D	H	L	R	L	V	G	L	H	S	H	I	G	S	Q	I	F	D	V	D	G	F	E	L	A	A	H	R	V	I	G	L	L	R	D	V	V	G	E	F	G	P	E	K	T	A	Q	I	A	T	V	D	L	G	G	G	L
Template Known Secondary structure			S	S	S	S			T	T	T	T													S	S																	S																										S	T	T										B
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																		.																														.	.	.	.	.
Query SS confidence																																		.																														.	.	.	.	.
Query Sequence		S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	.	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	.	.	.	M	G	S	R	H	F	V	L	V	D	A	G	F
Query Conservation																																		.																														.	.	.	.	.
Alig confidence																																		.																														.	.	.	.	.
Template Conservation
Template Sequence		G	I	S	Y	L	P	S	D	D	P	P	P	I	A	E	L	A	A	K	L	G	T	I	V	S	D	E	S	T	A	V	G	L	P	T	P	K	L	V	V	E	P	G	R	A	I	A	G	P	G	T	I	T	L	Y	E	V	G	T	V	K	D	V	D	V	S	A	T	A	H	R	R	Y	V	S	V	D	G	G	M
Template Known Secondary structure					S	S	T	T																								T	T								B			S					S	T	T																S	S	S									S			T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	.	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S
Query Conservation																																																														.
Alig confidence																							.	.	.	.																									.	.	.	.	.	.	.					.
Template Conservation																							.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		S	D	N	I	R	T	A	L	Y	G	A	Q	Y	D	V	R	L	V	S	R	V	.	.	.	.	S	D	A	P	P	V	P	A	R	L	V	G	K	H	C	E	S	G	D	I	I	V	R	D	.	.	.	.	.	.	.	T	W	V	P	D	D	I	R	P	G	D	L	V	A	V	A	A	T	G	A	Y	C	Y	S
Template Known Secondary structure		T	T																	S	S		.	.	.	.			S										S	S	S	S	T	T							.	.	.	.	.	.	.					T	T			T	T						S			S	S	S	S	S	T
Template Predicted Secondary structure																							.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.								.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	S	N	Y	N	S	R	P	L	L	P	E	V	L	F	D	N	G	Q	A	R	L	I	R	R	R	Q	T	I	E	E	L	L	A	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	S	R	Y	N	M	V	G	R	P	A	V	V	A	V	H	A	G	N	A	R	L	V	L	R	R	E	T	V	D	D	L	L	S	L	E	V
Template Known Secondary structure		T				G	G	G											T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.