Job Description P00861 Confidence 37.81% Date Thu Jan 5 10:56:56 GMT 2012 Rank 81 Aligned Residues 172 % Identity 21% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.											.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.
Predicted Secondary structure													.								.	.	.	.	.	.	.	.	.	.																																									.							.	.	.	.
Query SS confidence													.								.	.	.	.	.	.	.	.	.	.																																									.							.	.	.	.
Query Sequence		H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	.	.	.	.	.	.	.	.	.	.	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	.	.	.	.
Query Conservation													.								.	.	.	.	.	.	.	.	.	.																																									.							.	.	.	.
Alig confidence													.								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.																							.							.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	.	.	.	.	.	G	V	T	Y	A	A	L	A	P	N	L	K	G	F	E	A	A	L	E	S	G	V	K	E	V	A	V	F	A	A	A	S	E
Template Known Secondary structure										T	T		S								S		T	T	T		G	G	G	T	T								S				T	.	.	.	.	.	T	S								S										T	T										S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
																124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																										.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	K	T	N	T	G	G	E	N	S	K	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	V	D	P	R	Q	V	A	W	V	A	R	E	L	Q	Q	M	G	C	Y	E	V	S	L	G	D	T	I	G	.	.	.	.	.
Template Known Secondary structure									S	S																			T	T										T	T		B	T	T	T	B																	T	T		S							S	S	S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.
Predicted Secondary structure																		.	.																																																									.
Query SS confidence																		.	.																																																									.
Query Sequence		G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	.	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	.	E	A	V	D	T
Query Conservation																		.	.																																																									.
Alig confidence																		.	.						.																		.	.	.	.	.	.	.	.																										.
Template Conservation																									.																		.	.	.	.	.	.	.	.
Template Sequence		V	G	T	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L	.	A	G	H	F	H	D	T	Y	G	Q	A	L	A	N	I	Y	A	.	.	.	.	.	.	.	.	S	L	L	E	G	I	A	V	F	D	S	S	V	A	G	L	G	G	C	P	Y	A	K	G	A	T	G	N	V	A	S
Template Known Secondary structure																T	T	T	S		G	G	G		.					B		T	T	S									.	.	.	.	.	.	.	.				T	T							B	G	G	G			B		G	G	G	T	T		B		B		B
Template Predicted Secondary structure																									.																		.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		242	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Y	Y	G	L	W	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	V	L	Y	L	L	N	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions