Job Description P00861 Confidence 99.96% Date Thu Jan 5 10:56:56 GMT 2012 Rank 37 Aligned Residues 295 % Identity 15% Template c2dy3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum Resolution 2.10 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.												.	.	.	.														.
Query SS confidence																							.	.	.												.	.	.	.														.
Query Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I
Query Conservation																							.	.	.												.	.	.	.														.
Alig confidence																							.	.	.												.	.	.	.														.																					.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		L	L	T	T	K	I	D	L	D	A	I	A	H	N	T	R	V	L	K	Q	M	A	G	P	A	K	L	M	A	V	V	K	A	N	A	Y	N	H	G	V	E	K	V	A	P	V	I	A	A	H	G	A	D	A	F	G	V	A	T	L	A	E	A	M	Q	L	R	D	I	G	I	S	Q	.	.	.	.	.	E	V
Template Known Secondary structure		S																						T	T	S												T	T											T	T	T																		T	T			S	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.						.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V
Query Conservation
Alig confidence								.																																		.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																		.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	C	W	I	W	T	.	P	E	Q	D	F	R	A	A	I	D	R	N	I	D	L	A	V	I	S	P	A	H	A	K	A	L	I	E	T	D	A	E	H	.	.	.	I	R	V	S	I	K	I	D	S	G	L	H	.	.	.	.	.	.	.	.	.	.	R	S	G	V	D	E	Q	E	W	E	G	V	F	S	A
Template Known Secondary structure								.	T	T	S							T	T	T							S									T				S		.	.	.							B			S	S		.	.	.	.	.	.	.	.	.	.	S	S	S	B
Template Predicted Secondary structure								.																																		.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		178	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A
Query Conservation					.
Alig confidence					.																																																										.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		L	A	A	A	P	H	I	E	V	T	G	M	F	T	H	L	A	C	A	P	E	T	D	R	Q	I	I	A	F	R	R	A	L	A	L	A	R	K	H	G	L	E	C	P	V	N	H	V	C	N	S	P	A	F	L	T	R	S	D	L	H	.	.	.	.	.	.	.	M	E	M	V	R	P	G	L	A	F	Y	G
Template Known Secondary structure						T	T																																	T	T							B								T	T		G	G	G		.	.	.	.	.	.	.	T	T						G	G	G	G	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.																		.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																		.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	P	V	A	G	L	E	H	G	L	K	P	.	.	.	.	.	.	.	A	M	T	W	E	A	K	V	S	V	V	K	Q	I	R	G	F	.	V	A	V	V	P	A	G	Y	A	D	G	M	P	R	H	A	Q	G	K	F	S	V	T	I	.	.	.	.	.	.	.	.	.	.	.	.	D	G	L	D	Y	P
Template Known Secondary structure				S	S	T	T								.	.	.	.	.	.	.																		.					S			G	G	G	T			G	G	G	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.																		.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.								.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.													.	.	.	.	280	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	.	E	V	K	A	G	D	Y	L	V	L	H	D
Query Conservation																												.
Alig confidence									.	.								.	.	.	.	.	.					.
Template Conservation									.	.								.	.	.	.	.	.
Template Sequence		Q	V	G	R	V	C	M	.	.	D	Q	F	V	I	S	L	.	.	.	.	.	.	G	D	N	P	H	G	V	E	A	G	A	K	A	V	I	F	G
Template Known Secondary structure				S				S	.	.	S							.	.	.	.	.	.		T		T	T				T	T							S
Template Predicted Secondary structure									.	.								.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.			.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions