Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 30 Aligned Residues 283 % Identity 18% Template c1xfcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site Resolution 1.90 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																			.	.	.												.	.	.	.														.
Query SS confidence																			.	.	.												.	.	.	.														.
Query Sequence		V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A
Query Conservation																			.	.	.												.	.	.	.														.
Alig confidence																			.	.	.												.	.	.	.														.																						.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		M	V	D	L	G	A	I	E	H	N	V	R	V	L	R	E	H	A	G	H	A	Q	L	M	A	V	V	K	A	D	G	Y	G	H	G	A	T	R	V	A	Q	T	A	L	G	A	G	A	A	E	L	G	V	A	T	V	D	E	A	L	A	L	R	A	D	G	I	T	A	P	.	.	.	.	.	.	V	L	A	W
Template Known Secondary structure																				T	T	S												T	T												T	T							S											T	T			S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	.
Query Conservation																																																																																	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	P	P	G	I	D	F	G	P	A	L	L	A	D	V	Q	V	A	V	S	S	L	R	Q	L	D	E	L	L	H	A	V	R	R	T	G	R	T	A	T	V	T	V	K	V	D	T	G	L	N	.	.	.	.	.	.	.	.	.	.	R	N	G	V	G	P	A	Q	F	P	A	M	L	T	A	L	R	Q	A
Template Known Secondary structure					T	T									T	T							S															T									B		S	S			.	.	.	.	.	.	.	.	.	.	S	S	S	B		T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.											140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
					181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.	.	.																							.	.	.	.	.
Query SS confidence		.	.	.																							.	.	.	.	.
Query Sequence		.	.	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R
Query Conservation		.	.	.																							.	.	.	.	.
Alig confidence		.	.	.																							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	E	D	A	V	R	L	R	G	L	M	S	H	M	V	Y	A	D	K	P	D	D	S	I	N	D	V	Q	A	Q	R	F	T	A	F	L	A	Q	A	R	E	Q	G	V	R	F	E	V	A	H	L	S	N	S	S	A	T	M	A	R	P	D	L	T	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	S											S		S	S		T	T	S																				T	T				S														G	G	G			S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.														.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	P	G	I	A	V	Y	G	L	S	P	V	P	A	L	G	D	M	G	L	V	P	A	M	T	V	K	C	A	V	A	L	V	K	S	I	R	D	T	N	L	A	L	L	P	I	G	Y	A	D	G	V	F	R	S	L	G	G	R	L	E	V	L	I	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	G	T			S	S	G	G	G		S	T	T																										S			G	G	G	T			G	G	G	T	T	T						.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Template SS confidence
															226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	.	E	V	K	A	G	D	Y	L	V	L	H	D
Query Conservation																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	N	G	R	R	C	P	G	V	G	R	I	C	M	D	Q	F	M	V	.	.	.	.	.	.	.	.	D	L	G	P	G	P	L	D	V	A	E	G	D	E	A	I	L	F	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T							S				S	S					.	.	.	.	.	.	.	.				S	S	S					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
													307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.									.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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