Job Description P00861 Confidence 99.96% Date Thu Jan 5 10:56:56 GMT 2012 Rank 35 Aligned Residues 313 % Identity 19% Template c1vftA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae Resolution 2.30 Å

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		25	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure								.																	.	.	.										.	.	.	.																.
Query SS confidence								.																	.	.	.										.	.	.	.																.
Query Sequence		G	C	P	V	W	V	.	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	.	.	.	.	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D
Query Conservation								.																	.	.	.										.	.	.	.																.
Alig confidence								.																	.	.	.										.	.	.	.																.																				.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		P	T	R	V	Y	A	E	I	D	L	D	A	V	R	A	N	V	R	A	L	R	A	R	A	P	R	S	A	L	M	A	V	V	K	S	N	A	Y	G	H	G	A	V	P	C	A	R	A	A	Q	E	A	G	A	A	W	L	G	T	A	T	P	E	E	A	L	E	L	R	A	A	G	I	Q	.	.	.	.	.	.
Template Known Secondary structure			S	S																			T	T	S	T	T	S													T													T		S					S	S										T	T			.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L
Query Conservation
Alig confidence																																																				.							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.							.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	I	M	C	W	L	W	T	P	G	G	P	W	R	E	A	I	E	T	D	I	D	V	S	V	S	G	M	W	A	L	D	E	V	R	A	A	A	R	A	A	G	R	T	A	R	I	Q	L	.	A	D	T	G	L	G	.	.	.	.	.	.	.	.	.	.	R	N	G	C	Q	P	A	D	W	A	E	L	V
Template Known Secondary structure		S									T	T									T	T							S														T	T	S							.			S	S			.	.	.	.	.	.	.	.	.	.	S	S	S			G	G	G
Template Predicted Secondary structure																																																				.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.
		176	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																								.	.	.	.	.
Query SS confidence					.	.	.	.																								.	.	.	.	.
Query Sequence		D	V	I	.	.	.	.	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	.	.	.	.	.	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G
Query Conservation					.	.	.	.																								.	.	.	.	.
Alig confidence					.	.	.	.																								.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		G	A	A	V	A	A	Q	A	E	G	T	V	Q	V	T	G	V	W	S	H	F	A	C	A	D	E	P	G	H	P	S	I	R	L	Q	L	D	A	F	R	D	M	L	A	Y	A	E	K	E	G	V	D	P	E	V	R	H	I	A	N	S	P	A	T	L	T	L	P	E	T	H	F	D	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S											S	S	T	T	S	T	T																					T	T				S														G	G	G		S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																290	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	S	R	H	F
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	T	G	L	A	V	Y	G	V	S	P	S	P	E	L	G	T	P	A	Q	L	G	L	R	P	A	M	T	L	R	A	S	L	A	L	V	K	T	V	P	A	G	H	G	V	S	Y	G	H	H	Y	V	T	E	S	E	T	H	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	G	T			S		G	G	G			T	T	T	T	T																			T	T				S	G	G	G					S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.
Template Sequence		A	L	V	P	A	G	Y	A	D	G	I	P	R	N	A	S	G	R	G	P	V	L	V	.	.	.	.	.	.	.	.	.	.	.	.	A	G	K	I	R	R	A	A	G	R	I	A	M	.	.	D	Q	F	V	V	D	.	.	.	.	.	.	.	L	G	E	D	L	A	E	A	G	D	E	A	V	I	L	G	D
Template Known Secondary structure					S			T	T	T	T			G	G	G	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	T	T					B		S				S	.	.	S						.	.	.	.	.	.	.			T					T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.													.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		376							.	.	.	380	.	.	.	.	.	.	.	.	.								390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure			.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	A	Y	G	A	S	M	S	S	N	Y	N	S	R	.	.	.	.	.	.	.	P	L	L	P	E	V	L	F	D	N	G	Q
Query Conservation			.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	R	G	E	P	T	A	E	D	W	A	Q	A	A	H	T	I	A	Y	E	I	V	T	R	I	G	G	R	V	P	R	V	Y	L	G	G	L	E
Template Known Secondary structure		G	G	G	T											T	T	S								T			S	S	S						S	S		G
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low