Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 19 Aligned Residues 341 % Identity 23% Template c1njjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 Resolution 2.45 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		L	T	A	E	N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		L	E	G	F	N	T	R	D	A	L	C	K	K	G	D	P	F	F	V	A	D	L	G	D	I	V	R	K	H	E	T	W	K	K	C	L	P	R	V	T	P	F	Y	A	V	K	C	N	D	D	W	R	V	L	G	T	L	A	A	L	G	T	G	F	D	C	A	S	N	T	E	I	Q	R	V	R	G	I	G	V
Template Known Secondary structure					S	S	S																															T	T							G	G	G													T	T							S										T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W
Query Conservation																															.
Alig confidence					.	.	.	.																							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	E	.	.	.	.	K	I	I	Y	A	N	P	C	K	Q	I	S	H	I	R	Y	A	R	D	S	G	V	D	V	M	T	F	D	C	V	D	E	L	E	K	V	A	K	T	H	P	K	A	K	M	V	L	R	I	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	F	G	A	K
Template Known Secondary structure			G	G	.	.	.	.	G						S	S													T								S												T	T							B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		B
Template Predicted Secondary structure					.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H
Query Conservation																																					.	.	.	.
Alig confidence																																					.	.	.	.																																		.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		V	E	D	C	R	F	I	L	E	Q	A	K	K	L	N	I	D	V	T	G	V	S	F	H	V	G	S	G	S	T	D	A	S	T	F	A	Q	A	I	S	D	S	R	F	V	F	D	M	G	T	E	L	G	F	N	M	H	I	L	D	I	G	G	G	F	P	G	T	R	D	A	P	.	.	.	L	K	F	E	E
Template Known Secondary structure		G	G	G											T	T												S			S		T																				T	T														S	S	T	T	S	S	.	.	.	S
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D
Query Conservation
Alig confidence														.																																									.
Template Conservation														.																																									.
Template Sequence		I	A	G	V	I	N	N	A	L	E	K	H	.	F	P	P	D	L	K	L	T	I	V	A	E	P	G	R	Y	Y	V	A	S	A	F	T	L	A	V	N	V	I	A	K	K	V	T	Q	S	F	M	Y	Y	.	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H	A	V	V	R	P	L	P	Q	R	E
Template Known Secondary structure														.	S				T	T								S					G	G	G												B				B				.		S			T	T	T	G	G	G					S									S	S
Template Predicted Secondary structure														.																																									.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S
Query Conservation
Alig confidence		.	.	.	.																									.	.	.	.	.	.	.
Template Conservation		.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		.	.	.	.	P	I	E	K	L	Y	P	S	S	V	W	G	P	T	C	D	G	L	D	Q	I	V	E	R	.	.	.	.	.	.	.	Y	Y	L	P	E	M	Q	V	G	E	W	L	L	F	E	D	M	G	A	Y	T	V	V	S	P	T	I	Y	Y	V
Template Known Secondary structure		.	.	.	.													S	S	S		T	T							.	.	.	.	.	.	.								T	T							S			S	S
Template Predicted Secondary structure		.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
						344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.								.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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