Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 5 Aligned Residues 369 % Identity 19% Template c1d7kB_ PDB info PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution Resolution 2.10 Å

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		17	.	.	20	.	.	.	.										.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		L	L	R	L	P	A	E	F	.	.	.	.	.	.	.	.	.	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L
Query Conservation										.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																								.	.	.						.
Template Conservation																																																		.
Template Sequence		A	K	D	I	L	D	Q	K	I	N	E	V	S	S	S	D	D	K	D	A	F	Y	V	A	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	R	V	T	P	F	Y	A	.	V	C	N	D	S	K	A	I	V	K	T	L	A	A	T	G	T	G	F	D	C	A	S	K	T	E	I	Q	L	V	Q
Template Known Secondary structure												T	T	T	T	S	S																									T	T							.														T	T	T							S
Template Predicted Secondary structure																																																		.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K
Query Conservation																																			.
Alig confidence									.	.	.	.																							.																																				.	.	.	.	.	.
Template Conservation									.	.	.	.																																																											.	.	.	.	.	.
Template Sequence		S	L	G	V	P	P	E	.	.	.	.	R	I	I	Y	A	N	P	C	K	Q	V	S	Q	I	K	Y	A	A	N	N	G	V	Q	M	M	T	F	D	S	E	V	E	L	M	K	V	A	R	A	H	P	K	A	K	L	V	L	R	I	A	T	D	D	S	K	A	V	C	.	.	.	.	.	.	R	L	S	V	K
Template Known Secondary structure		T	T	T			G	G	.	.	.	.	G						S	S												T	T								S												T	T							B				S			S	S		.	.	.	.	.	.		S	S		S
Template Predicted Secondary structure									.	.	.	.																																																											.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.																															.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		F	G	A	T	L	R	T	S	R	L	L	L	E	R	A	K	E	L	N	I	D	V	V	G	V	S	F	H	V	G	S	G	C	T	D	P	E	T	F	V	Q	A	I	S	D	A	R	C	V	F	D	M	G	A	E	V	G	F	S	M	Y	L	L	D	I	G	G	G	F	P	G	S	E	.	.	.	D	V	K	L
Template Known Secondary structure		S		B																T												S			S		T																			T	T	T														S	S	S	.	.	.		S	S	S
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	.	.	.	.	.	.	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																				.																															.	.	.	.	.	.
Template Conservation																				.
Template Sequence		K	F	E	E	I	T	G	V	I	N	P	A	L	D	K	Y	F	P	.	S	D	S	G	V	R	I	I	A	E	P	G	R	Y	Y	V	A	S	A	F	T	L	A	V	N	I	I	A	K	K	I	V	L	K	E	Q	S	S	E	Q	T	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H
Template Known Secondary structure																		S		.	G	G	G									S					T	T	T																					S							S			T	T	T	G	G	G					S
Template Predicted Secondary structure																				.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P	L	L	P
Query Conservation
Alig confidence														.	.																									.	.	.	.	.	.	.
Template Conservation														.	.																									.	.	.	.	.	.	.
Template Sequence		A	H	V	K	P	L	L	Q	K	R	P	K	.	.	P	D	E	R	Y	Y	S	S	S	I	W	G	P	T	C	D	G	L	D	R	I	V	E	R	.	.	.	.	.	.	.	C	D	L	P	E	M	H	V	G	D	W	M	L	F	E	N	M	G	A	Y	T	V	A	A	A	S	T	F	N	G	F	Q	R	P	T
Template Known Secondary structure										S				.	.	T	T											S	S	S		T	T							.	.	.	.	.	.	.								T	T							S			S	S	S	G	G	G				G	G	G
Template Predicted Secondary structure														.	.																									.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.								370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		394	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		E	V	L	F	D	N	G	Q	A	.	R	L	I	R	R	R	Q
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		I	Y	Y	V	M	S	G	P	A	W	Q	L	M	Q	Q	F	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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