Job Description P66817 Confidence 99.82% Date Thu Jan 5 12:10:20 GMT 2012 Rank 14 Aligned Residues 161 % Identity 22% Template c3shoA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	R	I	K	A	C	F	T	E	S	I	Q	T	Q	I	A	A	A	E	A	L	P	D	A	I	S	R	A	A	M	T	L	V	Q	S	L	L	N	G	N	K	I	L	C	C	G	N	G	T	S	A	A	N	A	Q	H	F	A	A	S	M	I	N	R	F	E	T	E	R	P	S	L	P	A	I	A	L	N	T
Query Conservation
Alig confidence																										.	.	.											.																										.	.	.	.	.	.
Template Conservation																										.	.	.											.																										.	.	.	.	.	.
Template Sequence		Q	Q	L	P	V	Q	V	F	T	N	D	I	E	N	L	N	Q	T	L	N	Q	T	Q	P	.	.	.	E	A	I	E	A	A	V	E	A	I	.	R	A	D	H	V	I	V	V	G	X	G	F	S	A	A	V	A	V	F	L	G	H	G	L	N	.	.	.	.	.	.	S	L	G	I	R	T	T	V	L	T	E
Template Known Secondary structure		G	G																			T				.	.	.											.			S								G	G	G													.	.	.	.	.	.		T	T
Template Predicted Secondary structure																										.	.	.											.																										.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	V	L	T	A	I	A	N	D	R	L	H	D	E	V	Y	A	K	Q	V	R	A	L	G	H	A	G	D	V	L	L	A	I	S	T	R	G	N	S	R	D	I	V	K	A	V	E	A	A	V	T	R	D	M	T	I	V	A	L	T	G	Y	D	G	G	E	L	A	G	L	L	G	P	Q	D	V	E	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Sequence		G	G	S	T	L	T	I	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	P	T	D	L	X	I	G	V	S	V	W	R	Y	L	R	D	T	V	A	A	L	A	G	A	A	E	R	G	V	P	T	X	A	L	T	D	S	S	V	S	P	P	A	R	I	.	.	.	A	D	H	V	L
Template Known Secondary structure			T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			T	T									S	S															T	T								S		T	T	S						.	.	.		S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.
		162	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		R	I	P	S	H	R	S	A	R	I	.	.	Q	E	M	H	M	L	T	V	N	C	L	C	D	L	I	D	N	T
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		V	A	A	T	R	G	V	G	H	S	L	S	P	V	G	L	I	A	V	V	N	L	L	L	A	E	I	A	V	R
Template Known Secondary structure								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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