Job Description P66817 Confidence 96.23% Date Thu Jan 5 12:10:20 GMT 2012 Rank 55 Aligned Residues 133 % Identity 20% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	L	P	D	A	I	S	R	A	A	M	T	L	V	Q	S	L	L	N	G	N	K	I	L	C	C	G	N	G	T	S	A	A	N	A	Q	H	F	A	A	S	M	I	N	R	F	E	T	E	R	P	S	L	P	A	I	A	L	N	T	D	N	V	V	L	T	A	I	A	N	D	R	L	H	D	E	V	Y
Query Conservation
Alig confidence																			.																																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	R	T	W	E	K	L	L	L	A	A	R	A	I	V	A	.	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	.	F	T	N	Q	I	Q	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			.	S	S		G	G	G							S																					S	S					.				T	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	V	R	A	L	G	H	A	G	D	V	L	L	A	I	S	T	R	G	N	S	R	D	I	V	K	A	V	E	A	A	V	T	R	D	M	T	I	V	A	L	T	G	Y	D	G	G	E	L	A	G	L	L	G	P	Q	D	V	E	I	R	I	P	S	H	R	S	A	R	I	Q	E	M	H	M	L	T	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.																		.	.	.	.																							.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.																		.	.	.	.																							.	.	.	.	.	.	.																.	.
Template Sequence		.	.	.	.	.	.	.	F	R	E	P	R	L	L	V	V	T	D	P	R	A	D	H	Q	.	.	.	.	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	.	.	.	.	.	.	.	R	Y	V	D	I	A	I	P	C	N	N	K	G	A	H	.	.	S	V	G	L	M	W
Template Known Secondary structure		.	.	.	.	.	.	.					S					S		T	T	T	T			.	.	.	.									T									T	T				.	.	.	.	.	.	.	T	T		S					S		S	S				.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																		.	.	.	.																							.	.	.	.	.	.	.																.	.
Template SS confidence
									115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.
		180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	L	C	D	L	I	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	M	L	A	R	E	V	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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