Return to main results Retrieve Phyre Job Id

Job DescriptionP66817
Confidence100.00%DateThu Jan 5 12:10:20 GMT 2012
Rank1Aligned Residues193
% Identity100%Templatec2yvaB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN
Query Conservation 
 
 
   
   
             
  
       
    

 
 
 
 
   
   
  
       
       
 
Alig confidence 















































































Template Conservation 
 
 
   
                 
  
       
     
 
 
 
 
   
   
  
       
 
     
 
Template Sequence  MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN
Template Known Secondary structure 
STT

STT
SSS





SS
Template Predicted Secondary structure 















Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
Query Conservation                                



 

 

 
   
 
   

  
  




    
 

 
   

  
Alig confidence 















































































Template Conservation                                



 

 

 
   
 

  

  

 




    
 

 
   

  
Template Sequence  TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
Template Known Secondary structure 

TTSTTGGGTT

TT

SSS

TT

TT


TT
Template Predicted Secondary structure 




























Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190...
Predicted Secondary structure 






Query SS confidence 
































Query Sequence  IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPH
Query Conservation 
 

           
 
   
  

   

  
Alig confidence 
































Template Conservation 
 

             
   
  

   

  
Template Sequence  IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPH
Template Known Secondary structure 
S
S
S

Template Predicted Secondary structure 






Template SS confidence 
































   161........170.........180.........190...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions