Return to main results Retrieve Phyre Job Id

Job DescriptionP66817
Confidence36.54%DateThu Jan 5 12:10:20 GMT 2012
Rank268Aligned Residues106
% Identity10%Templatec2g1uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90.........100 .........110....
Predicted Secondary structure 





















....





Query SS confidence 





























































. . . .













Query Sequence  LNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYA. . . . KQVRALGHAGDVLL
Query Conservation      

 
 
 
 
   
   
  
       
       
                     ....          



Alig confidence 












...









......





























....













Template Conservation       


 
 
 ... 
  

  
 ......  
  



                     
      
    
  
  
Template Sequence  QKSKYIVIFGCGR. . . LGSLIANLAS. . . . . . SSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADM
Template Known Secondary structure 





S.........TT
S
GGGGGGS
TT

SS
TTSTTTGGG
S
Template Predicted Secondary structure 






.........















Template SS confidence 















































































   5....10....... ..20....... ..30.........40.........50.........60.........70.....
 
   115....120.........130..... ....140.........150...
Predicted Secondary structure 






.






Query SS confidence 




















.

















Query Sequence  AISTRGNSRDIVKAVEAAVTR. DMTIVALTGYDGGELAGL
Query Conservation   

 

 
   
 
   

  .
  




    
 

 
Alig confidence 




















.

















Template Conservation 

     
  
       
       

           
Template Sequence  VFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIF
Template Known Secondary structure 
SS
TS

S
SSGGG
Template Predicted Secondary structure 








Template SS confidence 







































   76...80.........90.........100.........110.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions