Job Description P24077 Confidence 3.53% Date Thu Jan 5 11:40:41 GMT 2012 Rank 19 Aligned Residues 401 % Identity 12% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																																.	.	.	.	.
Query SS confidence																																									.	.	.	.	.																																.	.	.	.	.
Query Sequence		K	T	H	P	A	F	R	A	V	F	L	A	R	F	I	S	I	V	S	L	G	L	L	G	V	A	V	P	V	Q	I	Q	M	M	T	H	S	T	W	.	.	.	.	.	Q	V	G	L	S	V	T	L	T	G	G	A	M	F	V	G	L	M	V	G	G	V	L	A	D	R	Y	E	R	K	K	.	.	.	.	.
Query Conservation																																									.	.	.	.	.																																.	.	.	.	.
Alig confidence																																									.	.	.	.	.																																.	.	.	.	.
Template Conservation
Template Sequence		K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H	K	I	P
Template Known Secondary structure																																				T	T	T	T	T	T																								G	G	G		T	T	S		S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
											84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	I	L	L	A	R	G	T	C	G	I	G	F	I	G	L	C	L	N	A	L	L	P	E	P	S	L	L	A	I	Y	L	L	G	L	W	D	G	F	F	A	S	L	G	V	T	A	L	L	A	A	T	P	A	L	V	G	R	E	N	L	M	Q	A	G	A	I	T	M	L	T
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I
Template Known Secondary structure																														S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		V	R	L	G	S	V	I	S	P	M	I	G	G	L	L	L	A	T	G	.	.	.	.	.	.	G	V	A	W	N	Y	G	L	A	A	A	G	T	F	I	T	L	L	P	L	L	S	L	P	A	L	P	P	P	P	Q	P	R	E	H	P	L	K	S	L	L	A	G	F	R	F	L	L	A	S	P	L	V	G	G
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A
Template Known Secondary structure															T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	L	L	G	G	L	L	T	M	A	S	A	V	R	V	L	Y	P	A	L	A	D	N	W	Q	M	S	A	A	Q	I	G	F	L	Y	A	A	I	P	L	G	A	A	I	G	A	L	T	S	G	K	L	A	H	S	A	R	P	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A
Template Known Secondary structure																		T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	M	L	L	S	T	L	G	S	F	L	A	I	G	L	F	G	L	M	P	M	W	I	L	G	V	V	C	L	A	L	F	G	W	L	S	A	V	S	S	L	L	Q	Y	T	M	L	Q	T	Q	T	P	E	A	M	L	G	R	I	N	G	L	W	T	A	Q	N	V	T	G	D	A	I	G	A	A	L	L	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L
Template Known Secondary structure																		T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		369	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		G	L	G	A	.	.	.	.	.	M	M	T	P	V	A	S	A	S	A	S	G	F	G	L	L	I	I	G	V	L	L	L	L	V	L	V	E	L	R	H	F	R	Q	T	P	P	Q	V	T	A	S
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A	A
Template Known Secondary structure						S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460