Job Description P24077 Confidence 99.97% Date Thu Jan 5 11:40:41 GMT 2012 Rank 3 Aligned Residues 364 % Identity 14% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	F	L	A	R	F	I	S	I	V	S	L	G	L	L	G	V	A	V	P	V	Q	I	Q	M	M	T	H	S	T	W	Q	V	G	L	S	V	T	L	T	G	G	A	M	F	V	G	L	M	V	G	G	V	L	A	D	R	Y	E	R	K	K	V	I	L	L	A	R	G	T	C	G	I	G	F	I	G	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V
Template Known Secondary structure																										T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	L	L	P	E	P	S	L	L	A	I	Y	L	L	G	L	W	D	G	F	F	A	S	L	G	V	T	A	L	L	A	A	T	P	A	L	V	G	R	E	N	L	M	Q	A	G	A	I	T	M	L	T	V	R	L	G	S	V	I	S	P	M	I	G	G	L	L	L	A	T	G	G	V	A	W	N	Y	G
Query Conservation
Alig confidence					.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		T	T	S	.	.	.	.	.	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L
Template Known Secondary structure					.	.	.	.	.																																	T	S	S			S																							S	S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		92	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	A	G	T	F	I	T	L	L	P	L	L	S	L	P	A	L	P	P	P	P	Q	P	R	E	H	P	L	K	S	L	L	A	G	F	R	F	L	L	A	S	P	L	V	G	G	I	A	L	L	G	G	L	L	T	M	A	S	A	V	R	V	L	Y	P	A	L	A	D	N	W	Q	M	S	A	A	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S
Template Known Secondary structure																	S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		G	F	L	Y	A	A	I	P	L	G	A	A	I	G	A	L	T	S	G	K	L	A	H	S	A	R	P	G	L	L	M	L	L	S	T	L	G	S	F	L	A	I	G	L	F	G	L	.	.	M	P	M	W	I	L	G	V	V	C	L	A	L	F	G	W	L	S	A	V	S	S	L	L	Q	Y	T	M	L	Q	T
Query Conservation																																																	.	.
Alig confidence																																																	.	.
Template Conservation
Template Sequence		I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E
Template Known Secondary structure						T														T	T	T	T																T	S	S	S	S	S																											T	S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	P	E	A	M	L	G	R	I	N	G	L	W	T	A	Q	N	V	T	G	D	A	I	G	A	A	L	L	G	G	L	G	A	M	M	T	P	V	A	S	A	S	A	S	G	F	G	L	L	I	I
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V
Template Known Secondary structure					.																						S	T	T		T
Template Predicted Secondary structure					.
Template SS confidence
		327	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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