Job Description Q46797 Confidence 8.43% Date Thu Jan 5 12:34:17 GMT 2012 Rank 85 Aligned Residues 96 % Identity 18% Template c1ijgE_ PDB info PDB header:viral protein Chain: E: PDB Molecule:upper collar protein; PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein Resolution 2.90 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	I	L	A	S	T	F	E	D	D	K	T	A	A	E	T	H	Y	D	A	V	W	L	R	D	S	L	W	G	Y	M	A	L	V	S	D	Q	G	N	S	V	A	A	K	K	V	L	L	T	L	W	D	Y	M	S	T	P	D	Q	I	K	R	M	Q	D	V	I	S	N	P	K	R	L	D	G	I	P	V	Q
Query Conservation
Alig confidence																											.	.	.	.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	R	A	A	S	P	V	Y	Q	K	E	F	K	L	Y	N	Y	R	D	M	K	E	E	D	.	.	.	.	.	.	.	M	G	V	V	I	Y	N	N	D	M	A	F	.	P	T	T	P	T	L	E	L	F	A	A	E	L	A	E	L	K	E	I	I	S	V	N	Q	N	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S										S	S	S	S			S	S	.	.	.	.	.	.	.							S	S	T	T			.		S																								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.													.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		196	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.														.	.	.	.	.
Query SS confidence					.														.	.	.	.	.
Query Sequence		M	N	A	.	V	H	I	R	F	D	S	N	S	P	V	M	A	.	.	.	.	.	D	V	Q	E	E	G	K	P	Q	L	W	N	H	K	Q	N	D	A
Query Conservation					.														.	.	.	.	.
Alig confidence					.														.	.	.	.	.
Template Conservation
Template Sequence		A	Q	K	T	P	V	L	I	R	A	N	D	N	N	Q	L	S	L	K	Q	V	Y	N	Q	Y	E	G	N	A	P	V	I	F	A	H	E	A	L	D	S
Template Known Secondary structure			T	T											S	S	S											S	S	S	S						T	T			S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions