Job Description P08244 Confidence 96.96% Date Thu Jan 5 11:01:00 GMT 2012 Rank 97 Aligned Residues 180 % Identity 13% Template d1svda1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.80

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		55	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure											.											.																														.
Query SS confidence											.											.																														.
Query Sequence		P	Q	F	V	R	E	L	Q	Q	.	R	G	F	D	I	F	L	D	L	K	.	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	G	.	G	A	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T
Query Conservation											.											.																														.
Alig confidence											.											.																														.																	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		Q	D	A	T	E	T	A	E	A	Q	T	G	E	R	K	G	H	Y	L	N	V	T	A	P	T	P	E	E	M	Y	K	R	A	E	F	A	K	E	I	G	A	P	I	I	M	H	D	Y	I	T	G	G	F	T	A	N	T	G	L	A	K	W	C	Q	D	N	G	.	.	.	.	.	.	V	L	L	H	I	H	R
Template Known Secondary structure													S	S											S	S															T								T	T	T	T																T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.												.	190	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	M	E	A	S	D	L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	Q	.	.	.	.	.	.	.	.	.	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	.	.	.	.	.	.	.	.	.	.	.	P	G	I
Query Conservation																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.												.	.	.											.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.												.	.	.
Template Sequence		A	M	H	A	V	I	D	R	N	P	N	H	G	I	H	.	F	R	V	L	T	K	I	L	R	L	S	.	.	.	G	G	D	H	L	H	T	G	T	V	V	G	K	L	E	G	D	R	A	S	T	L	G	W	I	D	L	L	R	E	S	F	I	P	E	D	R	S	R	G	I	F	F	D	Q	D	W	G	S	M
Template Known Secondary structure		T	T						S		T	T	S	S			.												.	.	.			S							S	T	T	S		G	G	G														S					B	G	G	G	T	B		S					T	T
Template Predicted Secondary structure																	.												.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																							.									.										.
Query SS confidence																							.									.										.
Query Sequence		R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T	P	E	Q	A	L	S	.	A	G	V	D	Y	M	V	I	.	G	R	P	V	T	Q	S	V	D	.	P	A	Q	T	L	K	A	I	N	A	S	L	Q	R	S
Query Conservation																							.									.										.
Alig confidence																							.									.										.
Template Conservation
Template Sequence		P	G	V	F	A	V	A	S	G	G	I	H	V	W	H	M	P	A	L	V	N	I	F	G	D	D	S	V	L	Q	F	G	G	G	T	L	G	H	P	W	G	N	A	A	G	A	A	A	N	R	V	A	L	E	A	C
Template Known Secondary structure										S	S			G	G	G										S	S						S					T		T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions