Job Description P08244 Confidence 99.40% Date Thu Jan 5 11:01:00 GMT 2012 Rank 41 Aligned Residues 217 % Identity 13% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		7	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.																	50	.	.	.	.				.	.	.	.	.	60	.	.	.
Predicted Secondary structure														.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.										.
Query SS confidence														.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.										.
Query Sequence		S	S	S	R	A	V	T	N	S	P	V	V	.	.	V	A	L	D	Y	H	N	R	D	D	A	L	A	F	V	D	K	I	D	P	R	.	D	C	R	L	K	V	G	K	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	L	F	G	.	.	.	P	Q	F	V	R	E	L	Q	Q	.
Query Conservation														.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.										.
Alig confidence														.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.										.
Template Conservation
Template Sequence		D	F	R	K	F	Y	K	E	N	A	N	V	A	Y	T	V	L	G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I
Template Known Secondary structure			G	G	G	S		S	S	S								T	T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
			64	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.															.
Query SS confidence		.															.
Query Sequence		.	R	G	F	D	I	F	L	D	L	K	F	H	D	I	.	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	G	G	A	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E	A	S	D	L	V	D	L
Query Conservation		.															.
Alig confidence		.															.																													.																				.	.	.	.	.	.	.
Template Conservation																																														.																				.	.	.	.	.	.	.
Template Sequence		K	T	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	P	E	L	S	F	E	E	.	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	I	T	L	V	.	.	.	.	.	.	.	S	V	T	T	P	K	E	R	V
Template Known Secondary structure				S	S																										T	T							T	T			G	G	G	.												T								.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																														.																				.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	.	.	A	Q	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T	P	E	Q	A	L	S	A	G	V	D	Y	M	V
Query Conservation																														.	.
Alig confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	L	V	K	H	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	D	K	V	K	E	I	R	S	F	T	N	L	.	.	.	.	.	.	.	.	.	.	.	.	P	I	F	V	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I
Template Known Secondary structure						T	T			S								S		S	S																			T	T			S	.	.	.	.	.	.	.	.	.	.	.	.						S	S			S	S							T	T	T	S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.													.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		I	G	R	P	V	T	Q	.	.	S	V	D	P	A	Q	T	L	K	A	I	N	A	S	L	Q	R
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		V	G	T	S	I	V	K	C	F	K	Q	G	N	L	D	I	I	X	K	D	I	E	E	I	F	K
Template Known Secondary structure										T	T	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions