Return to main results Retrieve Phyre Job Id

Job DescriptionP08244
Confidence100.00%DateThu Jan 5 11:01:00 GMT 2012
Rank8Aligned Residues218
% Identity38%Templatec3tfxB_
PDB info PDB header:lyaseChain: B: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of orotidine 5'-phosphate decarboxylase from2 lactobacillus acidophilus
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30........ .40.........50.........60.........70.........80.........90..
Predicted Secondary structure 









.















Query SS confidence 
























.





















































Query Sequence  NSPVVVALDYHNRDDALAFVDKIDP. RDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLG
Query Conservation     
 



       
        . 
  

 
  
    
   
  
 
    
  
 
  


 
           
Alig confidence 
























.





















































Template Conservation     
 



         
           



  
    
   
  
      
  
 
  


 
           
Template Sequence  DRPVIVALDLDNEEQLNKILSKLGDPHDVFVKVGXELFYNAGIDVIKKLTQQGYKIFLDLKXHDIPNTVYNGAKALAKLG
Template Known Secondary structure 





SSTT

GGG
TTS
TT

S
TTT
Template Predicted Secondary structure 


















Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   93......100.........110......... 120.........130.........140 .........150.........160........
Predicted Secondary structure 







...







.








Query SS confidence 


























. . .




















.



























Query Sequence  VWMVNVHASGGARMMTAAREALVPFGK. . . DAPLLIAVTVLTSMEASDLVD. LGMTLSPADYAERLAALTQKCGLDGVVC
Query Conservation 

 



  

  

      
   
 ...     
 
   

        .          
          
  
 
 
Alig confidence 


























...




















.



























Template Conservation 

 



   
   
                      
                                   
      
Template Sequence  ITFTTVHALGGSQXIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPXAEQVLSLAKXAKHSGADGVIC
Template Known Secondary structure 
SGGG


TT




S
TT

TS

SS
TT
S
Template Predicted Secondary structure 





























Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   169170.........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 

































Query SS confidence 









































































Query Sequence  SAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ
Query Conservation          
         
 


       


    
       


 




 
  
 

  

      
 
Alig confidence 






















...........







































Template Conservation      
   
       
 
 


...........   
       










  
 

  

      
 
Template Sequence  SPLEVKKLHENIGDDFLYVTPGI. . . . . . . . . . . RPATPKXAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFN
Template Known Secondary structure 
TTT
SSS


...........



TT
S
TSSS
Template Predicted Secondary structure 







...........














Template SS confidence 









































































   162.......170.........180.... .....190.........200.........210.........220....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions