Job Description P08244 Confidence 99.07% Date Thu Jan 5 11:01:00 GMT 2012 Rank 51 Aligned Residues 185 % Identity 21% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.																							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70						.	.
Predicted Secondary structure																			.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.
Query SS confidence																			.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.
Query Sequence		Y	H	N	R	D	D	A	L	A	F	V	D	K	I	D	P	R	.	D	C	R	L	K	V	G	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	T	L	F	G	P	Q	F	V	R	E	L	Q	Q	.	.	R	G	F	D	I	F	L	.	.	.	.	.	D	L
Query Conservation																			.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.
Alig confidence																			.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.
Template Conservation
Template Sequence		D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V
Template Known Secondary structure		S	S															T	T		S	S										T	T																T	T																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	G	G	A	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E	A	S	D	L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E
Query Conservation
Alig confidence					.	.		.	.																			.																				.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.		.	.																			.																				.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	R	.	.	G	.	.	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	.	A	D	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	.	.	.	.	.	.	I	Q	P	I	F	I	A	P	P	T	A	S	.	.	.	.	.	.	.	.	.	.	.	D	E	T	L	R
Template Known Secondary structure			T	T	.	.		.	.												T							.	T	T	S		G	G	G											T	T	.	.	.	.	.	.									T	T			.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure					.	.		.	.																			.																				.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.			110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																																			.																							.	.
Query SS confidence																				.	.	.																																			.																							.	.
Query Sequence		R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	.	.	.	Q	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	.	M	T	P	E	Q	A	L	S	A	G	V	D	Y	M	V	I	G	R	P	V	T	Q	.	.
Query Conservation																				.	.	.																																			.																							.	.
Alig confidence									.	.										.	.	.													.	.	.	.	.	.	.	.	.	.	.	.											.																							.	.
Template Conservation									.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	Q	L	G	K	.	.	G	Y	T	Y	L	L	S	R	A	P	V	H	A	L	L	E	R	L	Q	Q	F	D	A	P	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I
Template Known Secondary structure									.	.	S																				T	T			.	.	.	.	.	.	.	.	.	.	.	.						S	S			S										T	T		S					S	S
Template Predicted Secondary structure									.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.													.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
					227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	V	D	P	A	Q	T	L	K	A	I	N	A	S	L	Q	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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