Job Description P08244 Confidence 100.00% Date Thu Jan 5 11:01:00 GMT 2012 Rank 21 Aligned Residues 237 % Identity 21% Template c3l52A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of putative orotidine 5'-phosphate2 decarboxylase from streptomyces avermitilis ma-4680 Resolution 1.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.																.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query Sequence		M	T	L	T	A	S	S	S	S	R	A	V	T	N	S	P	V	V	V	A	L	D	Y	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	D	A	L	A	F	V	D	K	I	D	P	R	D	C	R	L	K	V	G	K	E	M	F	T	L	F	G	P	.	.	.	.	.	.	.	Q	F	V
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	F	G	A	R	L	S	R	A	X	D	D	R	G	P	L	C	V	G	I	D	P	H	A	S	L	L	A	D	W	G	L	S	D	D	V	A	G	L	E	R	F	S	R	T	V	V	E	A	L	G	E	H	V	A	V	F	K	P	Q	S	A	F	F	E	R	F	G	S	R	G	V	A	V	L	E	K	T	V
Template Known Secondary structure																	S															T	T			S	S																T	T	T		S					B						T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		R	E	L	Q	Q	R	G	F	D	I	F	L	D	L	K	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	.	.	.	.	L	G	V	W	M	V	N	V	H	A	S	G	G	A	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.																																.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		A	E	A	R	A	A	G	A	L	V	V	X	D	A	K	R	G	D	I	G	S	T	X	A	A	Y	A	E	A	F	L	R	K	D	S	P	L	F	S	D	A	L	T	V	S	P	Y	L	G	Y	G	S	L	R	P	A	V	E	L	A	R	E	S	G	A	G	L	.	.	.	F	V	L	A	L	T	S	N	P	E
Template Known Secondary structure							T	T																								S	S	T	T	S	T	T			S							T	T		G	G	G	G											T				.	.	.								S	T	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160
		135	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		A	S	D	L	V	D	L	G	M	T	L	S	P	A	.	.	.	.	.	.	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	Q	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T	P	E
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																																					.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		G	G	E	V	Q	H	A	V	R	T	D	G	R	D	V	A	A	T	X	L	A	H	L	A	A	E	N	A	G	E	E	P	L	G	S	F	G	A	V	V	G	A	T	L	G	D	L	S	S	Y	D	L	D	I	N	G	P	L	L	A	P	G	I	G	A	Q	G	A	A	P	A	D	.	.	.	L	P	G	V	F
Template Known Secondary structure		T					T		B		T	T	S		B													T	T	T		S	S			S							T	T		S		G	G	G	S				S	S	S							T	T	S	T	T		S	G	G	G	.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		Q	A	L	S	A	G	V	D	Y	M	V	I	G	R	P	V	T	Q	S	V	D	P	.	.	.	.	A	Q	T	L	K	A	I	N	A	S	L	Q	R	S
Query Conservation																								.	.	.	.
Alig confidence									.															.	.	.	.
Template Conservation									.
Template Sequence		G	A	A	V	R	N	V	.	V	P	N	V	S	R	G	V	L	R	H	G	P	D	V	R	A	L	R	T	A	A	D	R	F	A	E	E	I	R	A	A
Template Known Secondary structure		G	G	G	G	G	G		.					S					T	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		238	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions