 |
Job Description | P08244 | Confidence | 35.20% | Date | Thu Jan 5 11:01:00 GMT 2012 |
Rank | 276 | Aligned Residues | 84 |
% Identity | 10% | Template | c2oczA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:3-dehydroquinate dehydratase; |
PDBTitle: the structure of a putative 3-dehydroquinate dehydratase from2 streptococcus pyogenes.
|
Resolution | 1.85 Å |
|
 |
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
. | . | . | . | . | . | . | . | . | 60 | . | . | . | |
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 80 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|  |  |  |  | . |  |  |
|
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
S | P | V | V | V | A | L | D | Y | H | N | R | D | D | A | L | A | F | V | D | K | I | D | P | R | D | C | R | L | K | V | G | K | E | M | F | . |
T | L | F | G | P | Q | F | V | R | E | L | Q | Q | . |
. |
R | G | F | D | I | F | L | D | L | K | F | H | D | I | P | . |
. |
. |
. |
. |
. |
. |
. |
N | T | A | A | H |
Query Conservation |   |
  |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   | . |   |   |   |
|   |   |   |
|   |   |
|   |
| . | . |   |   |   |   |
|   |   |
|   |
|   |   |
|
|
| . | . | . | . | . | . | . | . |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
X | R | I | V | A | P | V | X | P | R | H | F | D | E | A | Q | A | I | D | I | S | K | Y | E | D | V | N | L | I | E | W | R | A | D | F | L | P | K | D | E | I | V | A | V | A | P | A | I | F | E | K | F | A | G | K | E | I | I | F | T | L | R | T | V | Q | E | G | G | N | I | T | L | S | S | Q | E | Y | V | D | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
| S | S |  |  |  |  |  | T |
|
| G | G | G | G | T | T |
| S |  |  |  |  |  | G | G | G | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |  |  |  |
|
| B | G | G | G | T |
| S | B |
|
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | V | A | A | A | A | D | L | G | V | W | M | V | N | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
Template Sequence |   |
I | K | E | I | N | A | I | Y | N | P | D | Y | I | D | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|