Job Description P08244 Confidence 89.17% Date Thu Jan 5 11:01:00 GMT 2012 Rank 165 Aligned Residues 185 % Identity 17% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.													.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.															.																	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.															.																	.	.	.	.	.	.
Query Sequence		V	T	N	S	P	V	V	V	A	L	D	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	N	R	D	D	A	L	A	F	V	D	K	I	D	P	.	R	D	C	R	L	K	V	G	K	E	M	F	T	L	F	G	.	.	.	.	.	.	P	Q	F	V	R	E	L	Q	Q	R	G	F	D	I	F	L	D	L
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.															.																	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.															.																	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	L	P	K	K	V	R	L	V	E	V	G	P	R	D	G	L	Q	N	E	K	Q	P	I	E	V	A	D	K	I	R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	G	V	T	Y	A	A	L
Template Known Secondary structure						S	B							T	T	T					T	S	S	S																	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E	A	S	D
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation					.	.	.	.	.	.																																																									.	.
Template Sequence		A	P	N	.	.	.	.	.	.	L	K	G	F	E	A	A	L	E	S	G	V	K	E	V	A	V	F	A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	.	.	G	Y	I	S	C	V	L	G	C	P	Y	D	G
Template Known Secondary structure				S	.	.	.	.	.	.										T	T										S										S	S																			T	T					.	.						T	T		B	T	T	T	B
Template Predicted Secondary structure					.	.	.	.	.	.																																																									.	.
Template SS confidence
		81	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.												.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	Q	.	.	.	.	.	.	.	.	.	.	.	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template Sequence		D	V	D	.	.	.	.	.	.	.	P	R	Q	V	A	W	V	A	R	E	L	Q	Q	M	G	C	Y	E	V	S	L	G	D	T	I	G	V	G	T	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L	A	G	.	.	.	.	.	.	.	H	F	H	D	T	Y	G	Q	A	L	A	N
Template Known Secondary structure					.	.	.	.	.	.	.														T	T		S							S	S	S															T	T	T	S		G	G	G				.	.	.	.	.	.	.			B		T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template SS confidence
		153	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.								.	.	.	210	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	A	L	S	A	G	V	D	Y	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	A	S	L	L	E	G	I	A	V	F
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions