Job Description P08244 Confidence 85.27% Date Thu Jan 5 11:01:00 GMT 2012 Rank 175 Aligned Residues 164 % Identity 18% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.															.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																	.																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	E	L	Q	Q	R	G	F	D	I	F	L	D	L	.	K	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	.	.	V	W	M	V	N	V	H	A	S	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D
Query Conservation																	.																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	G	K	N	K	T	S	V	D	A	A	E	D	Y	A	E	G	V	R	V	L	G	P	L	A	D	Y	L	V	V	N	V	S	S	P	N	T	A	G	L	R	S	L	Q	G	K	A	E	L	R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V
Template Known Secondary structure								T	T											T	T		S														G	G	G		S									T	T	S	T	T	S	G	G	G	G	S																	T	S		G	G
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	L	L	I	A	V	T	V	L	T	S	M	E	A	S	D	L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	R	P	A	V	L	V	K	I	A	P	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L	S	T
Template Known Secondary structure		G										S				.	.	.	.	.	.	.	.	.	.	.	.	.															T										B	S				T	T				T	T	T	T	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.														.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																							.							.
Query SS confidence																																																							.							.
Query Sequence		Q	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T	P	E	Q	A	L	S	A	G	V	D	Y	M	V	I	G	R	P	.	V	T	Q	S	V	D	.	P	A	Q	T	L	K	A	I	N	A	S	L	Q	R
Query Conservation																																																							.							.
Alig confidence																			.	.	.	.	.	.	.	.	.																												.							.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	.	.	.	.	.	.	.	.	.	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q	L	Y	T	A	L	T	F	W	G	P	P	V	V	G	K	V	K	R	E	L	E	A	L	L	K	E
Template Known Secondary structure											T	T	T		S				.	.	.	.	.	.	.	.	.			S	S			S											T		S					S								T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.										.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions