Job Description P08244 Confidence 99.28% Date Thu Jan 5 11:01:00 GMT 2012 Rank 44 Aligned Residues 212 % Identity 10% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.																							50	.	.	.
Predicted Secondary structure																			.	.	.	.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	L	T	A	S	S	S	S	R	A	V	T	N	S	P	V	.	.	.	.	V	V	A	L	D	Y	H	N	R	D	D	A	L	A	F	V	D	K	I	.	D	P	R	D	C	R	L	K	V	G	K	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	L	F
Query Conservation																			.	.	.	.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	R	I	S	D	K	F	T	E	L	K	E	K	R	E	K	A	L	V	S	Y	L	M	V	G	Y	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D
Template Known Secondary structure																T	B									T	T	S	S															T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		54	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure												.	.															.
Query SS confidence												.	.															.
Query Sequence		G	P	Q	F	V	R	E	L	Q	Q	.	.	R	G	F	D	I	F	L	D	L	K	F	H	D	I	.	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	G	G	A	R	M	M	T	A	A	R	E	A	L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L
Query Conservation												.	.															.
Alig confidence												.	.															.																						.																				.	.	.	.	.	.
Template Conservation																																																		.																				.	.	.	.	.	.
Template Sequence		V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	.	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	.	.	.	.	.	.	L	S	F	V	P	L
Template Known Secondary structure														T	T	S																										T	T							.	T	T																T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.																				.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		T	S	M	E	A	S	D	L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	Q	.	.	.	.	.	.	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I
Query Conservation																																											.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.													.	.											.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.													.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	P	T	S	T	.	.	.	.	.	.	.	.	.	.	.	R	K	R	I	K	L	I	C	E	A	A	D	.	.	E	M	T	Y	F	V	S	V	T	G	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	.	.	.	.	.	.	.	.	.	.	.	.	P	V	V	V	G	F	G	V	S	K
Template Known Secondary structure				T	T			.	.	.	.	.	.	.	.	.	.	.												S	.	.	S						S	S																			S	.	.	.	.	.	.	.	.	.	.	.	.						S	S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.													.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.													.	200	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		M	T	P	E	Q	A	L	S	A	G	V	D	Y	M	V	I	G	R	P	V	T	Q	S	.	.	V	D	P	A	Q	T	L	K	A	I	N	A	S	L	Q	R	S
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		K	E	H	A	R	E	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G	N	L	V	K	E	L	K	E	G
Template Known Secondary structure										T	T	S	S														T	T															T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions