Job Description P08244 Confidence 64.73% Date Thu Jan 5 11:01:00 GMT 2012 Rank 218 Aligned Residues 163 % Identity 17% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure															.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	F	G	P	Q	F	V	R	E	L	Q	Q	.	.	R	G	F	D	I	F	L	D	L	K	F	H	D	I	P	N	T	A	A	H	A	V	A	A	A	A	D	L	G	V	W	M	V	N	V	H	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	R	M	M	T	A	A	R	E	A
Query Conservation															.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	Y	W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W
Template Known Secondary structure																	T	T	S										S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E	A	S	D	L	V	D	L	G	M	T	L	S	P	A	D	Y	A	E	R	L	A	A	L	T	Q	K	C	G	L	D	G	V	V	C	S	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	Q	A	V	Q	.	.	.	.	.	I	P	F	F	A	K	L	T	P	N	V	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R
Template Known Secondary structure							S	.	.	.	.	.	S								S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.												T		S														B		T	T	S		B	S	S		B	T	T	T	T	B
Template Predicted Secondary structure								.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		698	.	700	.	.	.						.	.	.	.	.	.	710	.	.	.	.	.	.														.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
																			172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	V	R	F	K	Q	V	F	G	Q	E	F	K	L	V	T	P	G	I	R	P	Q	G	S	E	A	G	D	Q	R	R	I	M	T	P	E	Q	A	L	S	A	G	V	D	Y	M	V	I	G	R	P	V	T	Q	S	V	D	P	A	Q	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	.	.	.	.	.	.	.	.	.	.	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	.	.	F	T	V	I
Template Known Secondary structure									S	G	G	G															S	T	T							S	S			S	.	.	.	.	.	.	.	.	.	.										T	T		S					S					T	S		.	.	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.											.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.			.	.	.	.
		235	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	N	A	S	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	Y	C	T	G	L	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		828	.	830	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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