Job Description P31979 Confidence 100.00% Date Thu Jan 5 11:48:55 GMT 2012 Rank 1 Aligned Residues 426 % Identity 46% Template c2fugA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	T	H	P	L	T	W	R	L	R	D	D	K	Q	P	V	W	L	D	E	Y	R	S	K	N	G	Y	E	G	A	R	K	A	L	T	G	L	S	P	D	E	I	V	N	Q	V	K	D	A	G	L	K	G	R	G	G	A	G	F	S	T	G	L	K	W	S	L	M	P	K	D	E	S	M	N	I	R	Y
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		D	P	R	F	E	R	T	L	Y	A	H	V	G	K	E	G	S	W	T	L	D	Y	Y	L	R	H	G	G	Y	E	T	A	K	R	V	L	K	E	K	T	P	D	E	V	I	E	E	V	K	R	S	G	L	R	G	R	G	G	A	G	F	P	T	G	L	K	W	S	F	M	P	K	D	D	G	K	Q	.	H	Y
Template Known Secondary structure			T	T		T	T					S	S				S			S						T	T	T	T	T										S											T	T	T		B		T	T	S	S			B							T	S		S	S	S				.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	C	N	A	D	E	M	E	P	G	T	Y	K	D	R	L	L	M	E	Q	L	P	H	L	L	V	E	G	M	L	I	S	A	F	A	L	K	A	Y	R	G	Y	I	F	L	R	G	E	Y	I	E	A	A	V	N	L	R	R	A	I	A	E	A	T	E	A	G	L	L	G	K	N	I	M	G	T	G	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	C	N	A	D	E	S	E	P	G	S	F	K	D	R	Y	I	L	E	D	V	P	H	L	L	I	E	G	M	I	L	A	G	Y	A	I	R	A	T	V	G	Y	I	Y	V	R	G	E	Y	R	R	A	A	D	R	L	E	Q	A	I	K	E	A	R	A	R	G	Y	L	G	K	N	L	F	G	T	D	F	S
Template Known Secondary structure										S	T	T			S																								T										T	T																		T	T	S	S	B	S	S	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	L	F	V	H	T	G	A	G	R	Y	I	C	G	E	E	T	A	L	I	N	S	L	E	G	R	R	A	N	P	R	S	K	P	P	F	P	A	T	S	G	A	W	G	K	P	T	C	V	N	N	V	E	T	L	C	N	V	P	A	I	L	A	N	G	V	E	W	Y	Q	N	I	S	K	S	K	D	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	L	H	V	H	R	G	A	G	A	Y	I	C	G	E	E	T	A	L	M	N	S	L	E	G	L	R	A	N	P	R	L	K	P	P	F	P	A	Q	S	G	L	W	G	K	P	T	T	I	N	N	V	E	T	L	A	S	V	V	P	I	M	E	R	G	A	D	W	F	A	Q	M	G	T	E	Q	S	K	G
Template Known Secondary structure		B									S		G	G	G	G	S									T	T	S							S	S	S		T	T	T	S	B	G	G	G	B																			S							S	S	B		S	S		B	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		T	K	L	M	G	F	S	G	R	V	K	N	P	G	L	W	E	L	P	F	G	T	T	A	R	E	I	L	E	D	Y	A	G	G	M	R	D	G	L	K	F	K	A	W	Q	P	G	G	A	G	T	D	F	L	.	.	T	E	A	H	L	D	L	P	M	E	F	E	S	I	G	K	A	G	S	R	L	G	T	A
Query Conservation																																																								.	.
Alig confidence																																							.	.																.	.
Template Conservation																																							.	.
Template Sequence		M	K	L	Y	Q	I	S	G	P	V	K	R	P	G	V	Y	E	L	P	M	G	T	T	F	R	E	L	I	Y	E	W	A	G	G	P	L	E	.	.	P	I	Q	A	I	I	P	G	G	S	S	T	P	P	L	P	F	T	E	E	V	L	D	T	P	M	S	Y	E	H	L	Q	A	K	G	S	M	L	G	T	G
Template Known Secondary structure									S	S	B	S	S								T	T		B						T	T	T	T			B	S	S	.	.								S		T	T	S											T		B		S	T	T	T	T	T	T	T	S	S			S	T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		L	A	M	A	V	D	H	E	I	N	M	V	S	L	V	R	N	L	E	E	F	F	A	R	E	S	C	G	W	C	T	P	C	R	D	G	L	P	.	W	S	V	K	I	L	R	A	L	E	R	G	E	G	Q	P	G	D	I	E	T	L	E	Q	L	C	R	F	L	G	P	G	K	T	F	C	A	H	A	P	G
Query Conservation																																								.
Alig confidence																																								.																															.
Template Conservation																																																																							.
Template Sequence		G	V	I	L	I	P	E	R	V	S	M	V	D	A	M	W	N	L	T	R	F	Y	A	H	E	S	C	G	K	C	T	P	C	R	E	G	V	A	G	F	M	V	N	L	F	A	K	I	G	T	G	Q	G	E	E	K	D	V	E	N	L	E	A	L	L	P	L	I	E	.	G	R	S	F	C	P	L	A	D	A
Template Known Secondary structure								T	T	S																			S							T	T	T	T	T										T	B	T																			.	S			S	S	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	P	L	Q	S	A	I	K	Y	F	R	E	E	F	E	A	G	I	K	Q	P	F	S	N	T	H	L	I	N	G	I	Q
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		A	V	W	P	V	K	G	S	L	R	H	F	K	D	Q	Y	L	A	L	A	R	.	E	K	R	P	V	P	R	P	S	L	W	R
Template Known Secondary structure																							.	T	T		B
Template Predicted Secondary structure																							.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.