Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 29 Aligned Residues 389 % Identity 18% Template c3r31A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D	V	R
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	R	A	I	A	S	A	K	R	A	Q	K	E	W	A	A	M	S	P	M	A	R	G	R	I	L	K	R	A	A	D	I	M	R	E	R	N	D	A	L	S	T	L	E	T	L	D	T	G	K	P	I	Q	E	T	I	V	A	D	.	.	.	.	.	.	.	.	.	.	.	P	T	S	G	A	D	A	F	E
Template Known Secondary structure																			S																			T																							S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.												.	.	.	.	.	.	120	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	T	V	D	V	A	.	.	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A	V	I
Query Conservation																																																			.	.
Alig confidence																						.	.																												.	.
Template Conservation																						.	.
Template Sequence		F	F	G	G	I	A	P	S	A	L	N	G	D	Y	I	P	L	G	G	D	.	.	F	A	Y	T	K	R	V	P	L	G	V	C	V	G	I	G	A	W	N	Y	P	Q	Q	I	A	C	W	K	A	A	P	A	L	V	A	G	N	A	M	V	F	K	P	S	E	N	T	P	L	G	A	L	K	I	A	E	I	L
Template Known Secondary structure											T								S	S	S	.	.										S								S	S	S															T	T									T	T	S		S
Template Predicted Secondary structure																						.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	.	.	.	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V	E	I	A
Query Conservation																																																									.	.	.
Alig confidence					.	.	.	.																.	.																																.	.	.
Template Conservation					.	.	.	.																.	.
Template Sequence		I	E	A	.	.	.	.	G	L	P	K	G	L	F	N	V	I	Q	G	D	R	D	.	.	T	G	P	L	L	V	N	H	P	D	V	A	K	V	S	L	T	G	S	V	P	T	G	R	K	V	A	A	A	A	A	G	H	L	K	H	V	T	M	E	L	G	G	K	S	P	M	I	V	F	D	D	A	D	I	E
Template Known Secondary structure				T	.	.	.	.	T			T	T	S								T	T	.	.							T		T	T								S															T	T																	T	T	S
Template Predicted Secondary structure					.	.	.	.																.	.
Template SS confidence
		201	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	L	K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	A	D	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	V	G	G	A	M	L	G	N	F	Y	S	S	G	Q	V	C	S	N	G	T	R	V	F	V	Q	K	K	A	K	A	R	F	L	E	N	L	K	R	R	T	E	A	M	I	L	G	D	P	L	D	Y	A	T	H	L	G	P	L	V	S	K	A	Q	Q	E	K	V	L	S	Y	I	E	K	G	K	A	E	G
Template Known Secondary structure												T	S							T	T								G	G	G																	B			T	T	S	T	T		S	B			B	S																			T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
																		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	S	D	L	D	D	A	I	A	H	I	R	E	H	G	T	Q	H	S	D	A	I	L	T	R	D	M	R	N	A	Q	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	L	I	T	G	G	G	I	P	N	N	V	A	G	E	G	A	Y	V	Q	P	T	V	F	A	D	V	T	D	D	M	T	I	A	R	E	E	I	F	G	P	V	M	C	V	L	D	F	D	D	E	D	E	V	L	A	R	A	N	A	T	E	F	G	L	A	G	G	V	F	T	A	D	L	A	R	A	H	R
Template Known Secondary structure									S			S	S			S	S	S	B												T	T	S					S			S	S	S																				S	S			S							S
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	N	E	V	D	S	S	A	V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	G	L	G	A	E	V	A	V	S	T	Q	K	L	H	A	R	G	P	M	G	L	E	A	L	T	T	Y	K	W	I	G	I	G	D	Y
Query Conservation
Alig confidence																					.	.																		.	.
Template Conservation																					.	.																		.	.
Template Sequence		V	V	D	G	L	E	A	G	T	L	W	I	N	T	Y	N	L	C	P	.	.	V	E	I	P	F	G	G	S	K	Q	S	G	F	G	R	E	N	.	.	S	A	A	A	L	E	H	Y	S	E	L	K	T	V	Y	V	S	T	G
Template Known Secondary structure						S			S					S	S						.	.	T	T	S		B					T	T					B	S	.	.	T	G	G	G	G	G	G	S
Template Predicted Secondary structure																					.	.																		.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.			.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470			.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.