Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 37 Aligned Residues 389 % Identity 16% Template c3pqaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D	V	R
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	E	A	I	D	T	A	E	K	Y	K	E	V	M	K	N	L	P	I	T	K	R	Y	N	I	L	M	N	I	A	K	Q	I	K	E	K	K	E	E	L	A	K	I	L	A	I	D	A	G	K	P	I	K	Q	A	R	V	E	.	.	.	.	.	.	.	.	.	.	.	.	V	E	R	S	I	G	T	F	K
Template Known Secondary structure												T						T																				T																							.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.													.	.	.	.	.	100	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	.	.	T	V	D	V	A	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A	V	I
Query Conservation																																														.	.
Alig confidence													.	.	.																															.	.
Template Conservation													.	.	.
Template Sequence		L	A	A	F	Y	V	K	E	H	R	D	.	.	.	E	V	I	P	S	D	D	R	L	I	F	T	R	R	E	P	V	G	I	V	G	A	I	T	P	F	N	F	P	L	N	L	S	A	H	K	I	A	P	A	I	A	T	G	N	V	I	V	H	H	P	S	S	K	A	P	L	V	C	I	E	L	A	K	I	I
Template Known Secondary structure													.	.	.						T	T											S								S	S	S															T	T									T	T	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	.	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V	E	I	A	E	A
Query Conservation																																																									.
Alig confidence																																.																									.
Template Conservation																																.
Template Sequence		E	N	A	L	K	K	Y	N	V	P	L	G	V	Y	N	L	L	T	G	A	G	E	V	V	G	D	E	I	V	V	.	N	E	K	V	N	M	I	S	F	T	G	S	S	K	V	G	E	L	I	T	K	K	A	G	F	K	K	I	A	L	E	L	G	G	V	N	P	N	I	V	L	K	D	A	D	L	N	K	A
Template Known Secondary structure								T	T			G	G	G						S		T	T	T								.		T	T								S														S	S																T	T	S
Template Predicted Secondary structure																																.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure											.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	A	D	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	A	L	I	K	G	S	F	I	Y	A	G	Q	V	C	I	S	V	G	M	I	L	V	D	E	S	I	A	D	K	F	I	E	M	F	V	N	K	A	K	V	L	N	V	G	N	P	L	D	E	K	T	D	V	G	P	L	I	S	V	E	H	A	E	W	V	E	K	V	V	E	K	A	I	D	E	G	G	K
Template Known Secondary structure											G	G	G	G		S	T	T	S								G	G	G														T			B	S		T	T	S	T	T		S	B				S																		T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
									291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	S	D	L	D	D	A	I	A	H	I	R	E	H	G	T	Q	H	S	D	A	I	L	T	R	D	M	R	N	A	Q	R	F	V	N	E	V	D	S	S	A
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																				.
Template Conservation																																												.
Template Sequence		L	L	L	G	G	K	R	D	K	A	L	F	Y	P	T	I	L	E	V	D	R	D	N	I	L	C	K	T	E	T	F	A	P	V	I	P	I	I	R	T	N	E	.	E	E	M	I	D	I	A	N	S	T	E	Y	G	L	H	S	A	I	F	T	N	D	I	N	K	S	L	K	F	A	E	N	L	E	F	G	G
Template Known Secondary structure										T	T											T	T	S	G	G	G	T					S	S										.								T		S	S			S							S												S		S	S
Template Predicted Secondary structure																																												.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	G	L	G	A	E	V	A	V	S	T	Q	K	L	H	A	R	G	P	M	G	L	E	A	L	T	T	Y	K	W	I	G	I
Query Conservation
Alig confidence													.																		.	.
Template Conservation													.																		.	.
Template Sequence		V	V	I	N	D	S	S	L	F	R	Q	.	D	N	M	P	F	G	G	V	K	K	S	G	L	G	R	E	G	.	.	V	K	Y	A	M	E	E	M	S	N	I	K	T	I	I	I
Template Known Secondary structure					S	S		T	T				.	T	T	S		B			S	G	G	G			S		B	S	.	.								T
Template Predicted Secondary structure													.																		.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.