Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 46 Aligned Residues 357 % Identity 19% Template c3my7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D	V	R
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	X	I	A	R	V	K	K	A	Q	E	E	F	A	T	Y	S	Q	E	Q	V	D	K	I	F	R	A	A	S	L	A	A	N	Q	A	R	I	P	L	A	Q	Q	A	V	E	E	S	G	X	G	I	V	E	D	K	V	I	K	.	.	.	.	.	.	.	.	.	.	.	N	H	F	A	S	E	F	I	Y
Template Known Secondary structure																	T	T																				T															S									.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	T	V	D	V	.	.	A	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A	V	I
Query Conservation																																																		.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	Y	.	.	.	.	.	.	.	.	.	.	.	K	D	E	Q	T	C	G	I	L	T	X	T	I	A	E	P	V	G	I	I	C	G	I	V	P	T	T	N	P	T	S	T	A	I	F	K	S	L	I	S	L	K	T	R	N	G	I	I	F	S	P	H	P	R	A	K	N	S	T	N	D	A	A	K	L	V
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	T	T				S																				T	T	S	T	T													T	T									G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80												.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V	E	I	A	E	A	L
Query Conservation
Alig confidence																																.																												.	.	.
Template Conservation																																.																												.	.	.
Template Sequence		L	D	A	A	V	A	A	G	A	P	K	D	I	I	G	W	I	D	Q	P	S	V	E	L	S	N	A	L	X	K	.	H	D	D	I	A	L	I	L	A	T	G	G	P	G	X	V	K	A	A	Y	S	S	G	K	P	A	I	.	.	.	G	V	G	N	V	P	V	V	I	D	E	T	A	D	I	K	R	A	V
Template Known Secondary structure								T	T			T	T	S					S	S												.		T	T								S										T	S	S	S				.	.	.											T	T	S
Template Predicted Secondary structure																																.																												.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure										.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	A	D	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	V	L	X	S	K	T	F	D	N	G	V	V	C	A	S	E	Q	A	V	I	V	V	D	E	V	Y	D	E	V	K	E	R	F	A	S	H	K	A	H	V	L	S	K	T	D	A	D	K	V	R	K	V	L	L	I	D	G	A	L	N	A	K	I	V	G	Q	P	A	T	A	I	A	E	X	A	G	V	K
Template Known Secondary structure							G	G	G	G	G	G	G			T	T									G	G	G										T	T	T																			T	T				G	G	G	T	T											T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
					291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.					.	.	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.																																														.	.	.	.														.	.	.
Query SS confidence		.	.	.																																														.	.	.	.														.	.	.
Query Sequence		.	.	.	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	S	D	L	D	D	A	I	A	H	I	R	E	.	.	.	.	H	G	T	Q	H	S	D	A	I	L	T	R	D	.	.	.	M	R	N	A	Q	R	F	V	N	E	V	D
Query Conservation		.	.	.																																														.	.	.	.														.	.	.
Alig confidence		.	.	.																																														.	.	.	.														.	.	.
Template Conservation
Template Sequence		V	P	A	D	T	K	V	L	I	G	E	G	L	G	K	V	S	Y	D	D	A	F	A	H	E	K	L	S	P	T	L	G	X	F	R	A	D	N	F	E	D	A	V	A	Q	A	V	T	X	V	E	I	G	G	I	G	H	T	S	G	L	Y	T	N	Q	D	V	N	A	D	R	I	R	Y	F	G	D	K	X	K
Template Known Secondary structure				T	T									S	S	S			T	T		G	G	G	S			S	S	S								S	S																S	S								S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	G	L	G	A	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	R	I	L	I	N	I	P	T	T	S	E	N	V	G	P	K	H	L	I	N	K	K
Template Known Secondary structure			S					S										G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions