Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 35 Aligned Residues 388 % Identity 19% Template c3k9dD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D	V	R
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	N	L	I	E	S	A	N	K	A	Q	K	E	L	A	A	M	S	Q	Q	Q	I	D	T	I	V	K	A	I	A	D	A	G	Y	G	A	R	E	K	L	A	K	M	A	H	E	E	T	G	F	G	I	W	Q	D	K	V	I	K	.	.	.	.	.	.	.	.	.	.	.	N	V	F	A	S	K	H	V	Y
Template Known Secondary structure																	S	S																				T															S									.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.												.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	T	V	D	V	.	.	A	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A	V	I
Query Conservation																																																		.	.
Alig confidence						.	.	.	.																																									.	.
Template Conservation						.	.	.	.
Template Sequence		N	Y	I	K	.	.	.	.	D	M	K	T	I	G	M	L	K	E	D	N	E	K	K	V	M	E	V	A	V	P	L	G	V	V	A	G	L	I	P	S	T	N	P	T	S	T	V	I	Y	K	T	L	I	S	I	K	A	G	N	S	I	V	F	S	P	H	P	N	A	L	K	A	I	L	E	T	V	R	I	I
Template Known Secondary structure					T	.	.	.	.	T				S							T	T	T	T																	S	S	S															T	T									G	G	G
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		83	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V	E	I	A	E	A	L
Query Conservation
Alig confidence																																.																								.
Template Conservation																																.																								.
Template Sequence		S	E	A	A	E	K	A	G	C	P	K	G	A	I	S	C	M	T	V	P	T	I	Q	G	T	D	Q	L	M	K	.	H	K	D	T	A	V	I	L	A	T	G	G	S	A	M	V	K	A	A	Y	S	S	G	.	T	P	A	I	G	V	G	P	G	N	G	P	A	F	I	E	R	S	A	N	I	P	R	A	V
Template Known Secondary structure									T			T	T	S					S	S												.		T	T								S										T	S	S	.	S					B											T	T	S
Template Predicted Secondary structure																																.																								.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																																.	.
Predicted Secondary structure										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D
Query Conservation										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	H	I	L	D	S	K	T	F	D	N	G	T	I	C	A	S	E	Q	S	V	V	V	E	R	V	N	K	E	A	V	I	A	E	F	R	K	Q	G	A	H	F	L	S	D	A	E	A	V	Q	L	G	K	F	I	L	R	P	N	G	S	M	N	P	A	I	V	G	K	S	V	Q	H	I	A	N	L	A	G	L
Template Known Secondary structure									T	G	G	G	G	T	S	T	T	S								T	T	T											T	T																	B		T	T	S		B		T	T	T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		A	A	A	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	S	D	L	D	D	A	I	A	H	I	R	E	H	G	T	.	.	.	.	Q	H	S	D	A	I	L	T	R	D	M	R	N	A	Q	R	F	V	N	E	V	D	S	S	A
Query Conservation																																																					.	.	.	.
Alig confidence																																																					.	.	.	.
Template Conservation
Template Sequence		T	V	P	A	D	A	R	V	L	I	A	E	E	T	K	V	G	A	K	I	P	Y	S	R	E	K	L	A	P	I	L	A	F	Y	T	A	E	T	W	Q	E	A	C	E	L	S	M	D	I	L	Y	H	E	G	A	G	H	T	L	I	I	H	S	E	D	K	E	I	I	R	E	F	A	L	K	K	P	V	S	R
Template Known Secondary structure					T	T												S	S	S		T	T	T	S				S	S								S	S													T	T	T	T	T	T	S							S													S		S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.										.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	.	.	.	.	.	.	.	.	.	G	L	G	A	E	V	A	V	S	T	Q	K	L	H	A	R	G	P	M	G	L	E	A	L	T	T	Y	K	W	I	G	I	G
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		L	L	V	N	T	P	G	A	L	G	G	I	G	A	T	T	N	L	V	P	A	L	T	L	G	C	G	A	V	G	G	S	S	S	S	D	N	.	.	.	.	.	I	G	P	E	N	L	F	N	I	R	R	I	A	T	G
Template Known Secondary structure					S	S							T	T	S	S	S	S	S				S		B	B		T	G	G	G	T		S			S	B	.	.	.	.	.			G	G	G	S
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.						.	.	.	.	.	.	440	.	.	.	.	.	.	.	.