Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 3 Aligned Residues 388 % Identity 19% Template c3hazA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D	V	R
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	A	A	V	A	A	A	R	A	G	F	A	G	W	S	R	T	P	A	G	I	R	A	A	A	L	E	Q	A	A	H	L	L	E	S	R	S	A	H	F	I	A	L	L	Q	R	E	G	G	K	T	L	D	D	A	L	S	E	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	A	A	D	F	C	R
Template Known Secondary structure																		T	S																			T											T	T											.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.													.	610	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	T	V	D	V	.	.	A	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A	V	I
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		Y	Y	A	A	Q	G	R	K	L	F	G	S	E	T	A	M	P	G	P	T	G	E	S	N	A	L	T	M	R	G	R	G	V	F	V	A	I	S	P	W	N	F	P	L	A	I	F	L	G	Q	V	T	A	A	L	M	A	G	N	S	V	V	A	K	P	A	E	Q	T	P	R	I	A	R	E	A	V	A	L	L
Template Known Secondary structure												S	S								T	T											S								S	S	S	T	T													T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	.	.	.	.	.	.	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V
Query Conservation																																																									.	.	.	.	.	.
Alig confidence					.	.	.	.																.	.																																.	.	.	.	.	.
Template Conservation					.	.	.	.																.	.
Template Sequence		H	E	A	.	.	.	.	G	I	P	K	S	A	L	Y	L	V	T	G	D	G	R	.	.	I	G	A	A	L	T	A	H	P	D	I	A	G	V	V	F	T	G	S	T	E	V	A	R	S	I	N	R	A	L	A	A	K	D	G	P	I	V	P	L	I	A	E	T	G	G	I	N	A	M	I	A	D	A	T	A
Template Known Secondary structure					.	.	.	.	T			T	T	T										.	.									T	T								S															S	S	S																			T	T	S
Template Predicted Secondary structure					.	.	.	.																.	.
Template SS confidence
		698	.	700					.	.	.	.	.	.	.	.	.	710	.	.	.	.	.			.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	A	E	A	L	K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	A	D	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	E	Q	V	A	D	D	V	V	T	S	A	F	R	S	A	G	Q	R	C	S	A	L	R	L	L	F	V	Q	E	D	V	A	D	R	M	I	E	M	V	A	G	A	A	R	E	L	K	I	G	D	P	S	D	V	A	T	H	V	G	P	V	I	D	V	E	A	K	Q	R	L	D	A	H	I	A	R	M	K
Template Known Secondary structure																G	G	G	G		S	T	T																									T			B	S		T	T	S	T	T		S	B				S
Template Predicted Secondary structure
Template SS confidence
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
															291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	.	.	S	D	L	D	D	A	I	A	H	I	R	E	H	G	T	Q	H	S	D	A	I	L	T	R	D	M	R	N	A	Q	R	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																					.	.
Template Conservation																										.	.
Template Sequence		T	E	A	R	L	H	F	A	G	P	A	P	E	G	C	F	V	A	P	H	I	F	E	L	.	.	T	E	A	G	Q	L	T	E	E	V	F	G	P	I	L	H	V	V	R	Y	R	P	E	N	L	E	R	V	L	R	A	I	E	R	T	G	Y	G	L	T	L	G	V	H	S	R	I	D	D	S	I	E	A	I
Template Known Secondary structure				S										S	S	S										.	.	S	S	G	G	G			S				S	S									G	G	G											T				S							S
Template Predicted Secondary structure																										.	.
Template SS confidence
		852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.			.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	E	V	D	S	S	A	V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	G	L	G	A	E	V	A	V	S	T	Q	K	L	H	A	R	G	P	M	G	L	E	A	L	T	T	Y	K	W	I	G	I
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		I	D	R	V	Q	V	G	N	I	Y	V	N	R	N	M	I	G	A	V	V	G	V	Q	P	F	G	G	N	G	L	S	G	T	G	P	.	K	A	G	G	P	H	Y	L	A	R	F	A	T	E	Q	T	V	T	I
Template Known Secondary structure								S					S	S		S					T	T	T	S		B				G	G	G	B				.		B	T	S	T	T	S	G	G	G	G
Template Predicted Secondary structure																																					.
Template SS confidence
		930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.		.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.