Job Description P07004 Confidence 100.00% Date Thu Jan 5 10:59:56 GMT 2012 Rank 9 Aligned Residues 390 % Identity 18% Template c3ed6B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Resolution 1.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		L	E	Q	M	G	I	A	A	K	Q	A	S	Y	K	.	.	L	A	Q	L	S	S	R	E	K	N	R	V	L	E	K	I	A	D	E	L	E	A	Q	S	E	I	I	L	N	A	N	A	Q	D	V	A	D	A	R	A	N	G	L	S	E	A	M	L	D	R	L	A	L	T	P	A	R	L	K	G	I	A	D	D
Query Conservation																.	.
Alig confidence																.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	R	A	I	L	A	A	R	R	A	F	E	S	G	E	W	S	Q	E	T	A	E	T	R	G	K	K	V	R	A	I	A	D	K	I	K	E	H	R	E	A	L	A	R	L	E	T	L	D	T	G	K	T	L	E	E	S	Y	A	D	.	.	.	.	.	.	.	.	.	.	.	.	M	D	D	I	H	N	V
Template Known Secondary structure																T	T	T	T	T	S																			T																							.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		V	R	Q	V	C	N	L	A	D	P	V	G	Q	V	I	D	G	G	V	L	D	S	G	L	R	L	E	R	R	R	V	P	L	G	V	I	G	V	I	Y	E	A	R	P	N	V	T	V	D	V	.	.	A	S	L	C	L	K	T	G	N	A	V	I	L	R	G	G	K	E	T	C	R	T	N	A	A	T	V	A
Query Conservation																																																				.	.
Alig confidence																									.																											.	.
Template Conservation																									.
Template Sequence		F	M	Y	F	A	G	L	A	D	K	D	G	G	E	M	I	D	S	P	I	P	D	T	.	E	S	K	I	V	K	E	P	V	G	V	V	T	Q	I	T	P	W	N	Y	P	L	L	Q	A	S	W	K	I	A	P	A	L	A	T	G	C	S	L	V	M	K	P	S	E	I	T	P	L	T	T	I	R	V	F	E
Template Known Secondary structure									T	T	S									S	S	T	T		.																		S	S	S																T									T	T
Template Predicted Secondary structure																									.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		V	I	Q	D	A	L	K	S	C	G	L	P	A	G	A	V	Q	A	I	D	N	P	D	R	A	L	V	S	E	M	L	R	M	D	K	Y	I	D	M	L	I	P	R	G	G	A	G	L	H	K	L	C	R	E	Q	S	T	.	.	.	I	P	V	I	T	G	G	I	G	V	C	H	I	Y	V	D	E	S	V	E
Query Conservation																																																											.	.	.
Alig confidence							.	.	.	.																								.																									.	.	.
Template Conservation							.	.	.	.																								.
Template Sequence		L	M	E	E	V	.	.	.	.	G	F	P	K	G	T	I	N	L	I	L	G	A	G	S	E	V	G	D	V	M	S	G	.	H	K	E	V	D	L	V	S	F	T	G	G	I	E	T	G	K	H	I	M	K	N	A	A	N	N	V	T	N	I	A	L	E	L	G	G	K	N	P	N	I	I	F	D	D	A	D
Template Known Secondary structure							.	.	.	.				T	T	S						S			T	T								.		T	T		S						S														T	T	T																	T	T	S
Template Predicted Secondary structure							.	.	.	.																								.
Template SS confidence
		195	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure															.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	E	A	L	K	V	I	V	N	A	K	T	.	Q	R	P	S	T	C	N	T	V	E	T	L	L	V	N	K	N	I	A	D	S	F	L	P	A	L	S	K	Q	M	A	E	S	G	V	T	L	H	A	D	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	L	A	V	D	Q	A	L	N	G	G	Y	F	H	A	G	Q	V	C	S	A	G	S	R	I	L	V	Q	N	S	I	K	D	K	F	E	Q	A	L	I	D	R	V	K	K	I	K	L	G	N	G	F	D	A	D	T	E	M	G	P	V	I	S	T	E	H	R	N	K	I	E	S	Y	M	D	V	A	K	A
Template Known Secondary structure															G	G	G	G	T	S	T	T																								T	T			B			T	T	S	T	T		S	B				S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
																					291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	L	Q	A	G	P	A	K	V	V	A	V	K	A	E	E	Y	D	D	E	F	L	S	L	D	L	N	V	K	I	V	S	D	L	D	D	A	I	A	H	I	R	E	H	G	T	Q	H	S	D	A	I	L	T	R	D	M	R	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	A	T	I	A	V	G	G	K	R	P	D	R	D	D	L	K	D	G	L	F	F	E	P	T	V	I	T	N	C	D	T	S	M	R	I	V	Q	E	E	V	F	G	P	V	V	T	V	E	G	F	E	T	E	Q	E	A	I	Q	L	A	N	D	S	I	Y	G	L	A	G	A	V	F	S	K	D	I	G	K
Template Known Secondary structure			T								S					T	T	T	T	T	S										S			T	T	S					S				S	S								S	S									T		S	S			S							S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	F	V	N	E	V	D	S	S	A	V	Y	V	N	A	S	T	R	F	T	D	G	G	Q	F	G	L	G	A	E	V	A	V	S	T	Q	K	L	H	A	R	G	P	M	G	L	E	A	L	T	T	Y	K	W	I	G	I	G	D	Y
Query Conservation
Alig confidence																								.	.																		.	.
Template Conservation																								.	.																		.	.
Template Sequence		A	Q	R	V	A	N	K	L	K	L	G	T	V	W	I	N	D	F	H	P	Y	F	.	.	A	Q	A	P	W	G	G	Y	K	Q	S	G	I	G	R	E	L	.	.	G	K	E	G	L	E	E	Y	L	V	S	K	H	I	L	T	N	T	N
Template Known Secondary structure									S			S					S		S					.	.	T	T	S		B			S	G	G	G			S		B	S	.	.							T	T										S	S
Template Predicted Secondary structure																								.	.																		.	.
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.			.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.