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Job DescriptionP07004
Confidence100.00%DateThu Jan 5 10:59:56 GMT 2012
Rank27Aligned Residues390
% Identity17%Templatec1t90B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVR
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Template Sequence  IDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGE. . . . . . . . . . . . VGRGIENVE
Template Known Secondary structure  TTS
T


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   46...50.........60.........70.........80.........90.........100.... .....110...
 
   82.......90.........100.........110.........120......... 130.........140.........150.........
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Query Sequence  QVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDV. . ASLCLKTGNAVILRGGKETCRTNAATVAVI
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Template Sequence  FAAGAPSLMMGDSLASIATDV. EAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELF
Template Known Secondary structure  TT


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   114.....120.........130.... .....140.........150.........160.........170.........180.........190..
 
   160.........170.........180.........190.........200.........210.... .....220.........230......
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Query Sequence  QDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQST. . . IPVITGGIGVCHIYVDESVEIA
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Template Sequence  EKA. . . . GLPKGVFNVVYGA. . HDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLE
Template Known Secondary structure  T....T

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   193.. ....200........ .210.........220.........230.........240.........250.........260......
 
   237..240....... ..250.........260.........270.........280.........290
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Query Sequence  EALKVIVNAKT. QRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAA. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEG
Template Known Secondary structure  GGGG

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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   291........300.........310.........320.........330.........340.........350......
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Query Sequence  . . . . . . . . . . . . . . LAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFV
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Template Sequence  ARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFR
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   347..350.........360.........370.........380.........390.........400.........410.........420......
 
   357..360.........370.........380.........390.........400.........410.
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Query Sequence  NEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIG
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Template Sequence  ENIDAGMLGINLGVPAPM. AFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTAR
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   427..430.........440.... .....450.........460.........470.........480
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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