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Job DescriptionP39401
Confidence99.82%DateThu Jan 5 12:00:36 GMT 2012
Rank17Aligned Residues279
% Identity18%Templatec3q3qA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   154.....160... ......170.........180.........190.........200.........210.........220.........230
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Query Sequence  SKTIPDPKLN. LVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEG. .
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Template Sequence  ARSIAATPPKLIVAISVDQFSADLFSEY. RQYYTGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGIIAN
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STT

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   32.......40.........50......... 60.........70.........80.........90.........100.........110
 
   231........240.........250.........260.........270.........280....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . NASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYG
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Template Sequence  NWFDLDAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVV. . SVAGKDRAAIMMGGATADQVWW
Template Known Secondary structure 
TT
SSS

TTB
TTSTT
BTTB

B
STT

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TT

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TT
S
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   111........120.........130.........140.........150.........160...... ...170.........180........
 
   285....290.........300.... ..
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Query Sequence  SEELKSVVADPHYRNDWGFY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DD
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Template Sequence  LGGPQGYVSYKGVAPTPLVTQVNQAFAQRLAQPNPGFELPAQCVSKDFPVQAGNRTVGTGRFARDAGDYKGFRISPEQDA
Template Known Secondary structure 
STT

STT



TS
B





GGGGGG


TTS




B
TT
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   189190.........200.........210.........220.........230.........240.........250.........260........
 
   307..310........ .320.........330.........340.........350.........360.........370.........380....
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Query Sequence  TVLDEAWKKFEE. . LSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWF
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Template Sequence  MTLAFAAAAIENMQLGKQAQTDIISIGLSATDYVGHTFGTEGT. . . . . . . . . . . ESCIQVDRLDTELGAFFDKLDKDG. .
Template Known Secondary structure  TTTTSSSS


SSS...........TT..
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   269270.........280.........290.........300.........310. ........320.........330.....
 
   385....390.........400.........410.
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Query Sequence  KDTVIVVSSDHLAMNNTAWKYLNKQDR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IDYVVVLTADHGGHDLPERHRMNAMPMEQRVDMALTPKALNATIAEKAGLPGKKVIWSDGPSGDIYYDKGLTAAQRARVE
Template Known Secondary structure 


S





TTTT
TT


GGGST
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TT

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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TEALKYLRAHPQVQTVFTKAEIAATPSPSGPPESWSLIQEARASFYPSRSGDLLLLLKPRVMSIPEQAVMGSVATHGSPW
Template Known Secondary structure  STTTS



S
GGG

T

TTTS
S
TTSS


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   416...420.........430.........440.........450.........460.........470.........480.........490.....
 
   412.......420.........430.........440........
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Query Sequence  . . . NNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGD
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Template Sequence  DTDRRVPILFWRKGMQHFEQPLGVETVDILPSLAALIKLP
Template Known Secondary structure  TT




S
GGGTT

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   496...500.........510.........520.........530.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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