Job Description P39401 Confidence 100.00% Date Thu Jan 5 12:00:36 GMT 2012 Rank 3 Aligned Residues 295 % Identity 25% Template c3lxqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	K	T	I	P	D	P	K	L	N	L	V	Y	I	Y	G	E	S	L	E	R	T	Y	F	D	N	E	A	F	P	D	L	T	P	E	L	G	A	L	K	N	E	G	L	D	F	S	H	T	Q	Q	L	P	G	T	D	Y	T	I	A	G	M	V	A	S	Q	C	G	I	P	L	F	A	P	F	E	G	N	A
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		N	P	A	T	Y	Q	G	K	R	K	N	L	V	I	L	L	Q	E	S	L	G	A	Q	F	V	G	S	L	G	G	L	P	L	T	P	N	L	D	E	L	X	Q	E	G	W	Q	F	T	Q	X	.	.	Y	A	T	G	T	R	S	V	R	G	I	E	A	V	T	T	G	F	P	P	S	P	S	R	A	V	V	K
Template Known Secondary structure					S			S	S										T	T			G	G	G		G	G	G	T	S		S										T	T	S				T	T		.	.			S		S	S																S	S			T	T	T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	S	V	S	S	F	F	P	Q	N	I	C	L	G	D	I	L	K	N	S	G	Y	Q	N	Y	F	V	Q	G	A	N	L	R	F	A	G	K	D	V	F	L	K	S	H	G	F	D	H	L	Y	G	S	E	E	L	K	S	V	V	A	D	P	H	Y	R	N	D	W	G	F	Y	D	D	T	V	L	D	E	A
Query Conservation
Alig confidence											.	.	.																																													.	.	.	.
Template Conservation											.	.	.																																													.	.	.	.
Template Sequence		L	S	K	S	Q	T	G	F	F	.	.	.	T	I	A	D	L	L	K	E	Q	G	Y	H	T	Q	F	I	Y	G	G	E	A	N	F	D	N	X	K	T	F	F	F	G	N	G	F	D	Q	I	V	E	E	K	N	Y	.	.	.	.	T	N	P	G	F	V	G	S	W	G	V	S	D	E	D	L	Y	N	K	A
Template Known Secondary structure			G	G	G	S	S	S	B		.	.	.									T	T								S	S		T	T	G	G	G								T	T							G	G	G		.	.	.	.	S	S		S				T	T
Template Predicted Secondary structure											.	.	.																																													.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	K	F	E	E	L	S	R	S	G	Q	R	F	S	L	F	T	L	T	V	D	T	H	H	P	D	G	F	I	S	R	T	C	N	R	K	K	Y	D	F	D	G	K	P	N	Q	S	F	S	A	V	S	C	S	Q	E	N	I	A	T	F	I	N	K	I	K	A	S	P	W	F	K	D	T	V	I	V	V	S
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		D	E	E	F	E	R	L	S	K	G	D	K	P	F	F	S	L	V	F	T	S	S	N	H	S	P	Y	E	Y	P	E	G	K	I	E	Q	Y	.	.	.	.	D	S	E	H	X	T	R	N	N	A	V	K	Y	S	D	Y	A	L	G	T	F	F	D	K	A	K	K	S	S	Y	W	D	D	T	I	F	I	V	I
Template Known Secondary structure										T	S	S	S										S	S	S	T	T					T	T	S	S			S	.	.	.	.	S	S	S	S	S																					T	T	S	S	S	G	G	G
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.					.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		S	D	H	L	A	M	N	N	T	A	W	K	Y	L	N	K	Q	D	R	N	N	L	F	F	V	I	R	G	D	K	P	Q	Q	E	T	L	A	V	K	R	N	T	M	D	N	G	A	T	V	L	D	I	L	G	G	D	.	N	Y	L	G	L	G	R	S	S	L	S	G	Q	S
Query Conservation																																																										.
Alig confidence							.	.																																																		.
Template Conservation							.	.
Template Sequence		A	D	H	D	A	.	.	R	V	F	G	A	N	L	V	P	V	K	H	F	H	I	P	A	L	I	I	G	K	D	I	Q	P	R	K	D	D	R	I	A	N	N	I	D	X	P	P	T	L	L	S	L	I	G	V	D	A	K	T	P	X	I	G	R	D	L	T	K	P	L	A
Template Known Secondary structure			S			S	.	.				S		S	S			G	G	G	T								S	T	T												G	G	G										T									S			T	T	S
Template Predicted Secondary structure							.	.
Template SS confidence
		503	.	.	.	.			.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions