Job Description P77364 Confidence 25.13% Date Thu Jan 5 12:28:12 GMT 2012 Rank 177 Aligned Residues 142 % Identity 17% Template c3s3tD_ PDB info PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum Resolution 1.90 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	D	I	R	H	I	I	L	G	I	G	G	S	A	T	V	D	G	G	M	G	M	A	Q	A	L	G	V	R	F	L	D	A	D	G	Q	A	L	A	A	N	G	G	N	L	A	R	V	A	S	I	E	M	D	E	C	D	P	R	L	A	N	C	H	I	E	V	A	C	D	V	D	N	P	L	V	G	A	R
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	R	Y	T	N	I	L	V	P	V	D	S	S	D	A	A	Q	A	A	F	T	E	A	V	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	R	H	Q	A	N	L	T	A	L	Y	V	V	D	D	S	A	Y	H	T	P
Template Known Secondary structure														S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T																	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																																.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	A	V	F	G	P	Q	K	G	A	T	P	E	M	V	E	E	L	E	Q	G	L	Q	N	Y	A	R	V	L	Q	Q	Q	T	E	I	N	V	C	Q	M	A	G	G	G	A	A	G	G	M	G	I	A	A	A	V	F	L	N	A	D	I	K	P	G	I	E	I	V	L	N	A	V	N	L	A	Q	A	V
Query Conservation
Alig confidence										.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	P	V	L	S	E	.	.	.	L	L	D	A	E	A	A	H	A	K	D	A	X	R	Q	R	Q	Q	F	V	A	T	T	S	A	P	N	L	K	T	E	I	S	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	K	H	T	I	E	D	Y	A	K	Q	H
Template Known Secondary structure		G	G							.	.	.																						T	S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S
Template Predicted Secondary structure										.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																						.	.	.	.	.	.	100	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		Q	G	A	A	L	V	I	T	G	E	G	R	I	D	S	Q	T	.	.	A	G	G	K	A	P	L	G	V	A	S	V	A	K	Q	F	N	V	P	V	I	G	I
Query Conservation																			.	.
Alig confidence																			.	.														.	.	.
Template Conservation																																		.	.	.
Template Sequence		P	E	I	D	L	I	V	L	G	A	T	G	T	N	S	P	H	R	V	A	V	G	S	T	T	S	Y	V	V	D	H	A	.	.	.	P	C	N	V	I	V	I
Template Known Secondary structure		T	T								S			S	S		T	T	T		S	S												.	.	.	S	S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions