Job Description P77364 Confidence 24.47% Date Thu Jan 5 12:28:12 GMT 2012 Rank 181 Aligned Residues 208 % Identity 14% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																						.	.	.	.	.
Query SS confidence																	.																																						.	.	.	.	.
Query Sequence		A	E	K	C	C	Q	A	I	K	A	G	F	S	T	L	.	F	P	D	A	N	Y	I	C	L	P	I	A	D	G	G	E	G	T	V	D	A	M	V	A	A	T	G	G	N	I	V	T	L	E	V	C	G	.	.	.	.	.	P	M	G	E	K	V	N	A	F	Y	G	L	T	G	D	G	K	T	A	V	I	E
Query Conservation																	.																																						.	.	.	.	.
Alig confidence																	.																																						.	.	.	.	.											.	.
Template Conservation																																																																						.	.
Template Sequence		T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D	L	P	Y	.	.	D	P	I	K	D	F	Q	P	V	T
Template Known Secondary structure																		T	S										G	G	G										S		T	T	S	S											T						S	T	T	T		S		.	.		T	T	T	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																					.	.														.	.	.	.
Query SS confidence																																																					.	.														.	.	.	.
Query Sequence		M	A	A	A	S	G	L	M	L	V	A	P	E	K	R	N	P	L	L	A	S	S	F	G	T	G	E	L	I	R	H	A	L	D	N	D	I	R	H	I	I	L	G	I	G	G	S	A	T	V	D	.	.	G	G	M	G	M	A	Q	A	L	G	V	R	F	.	.	.	.	L	D	A	D	G	Q	A	L	A	A
Query Conservation																																																					.	.														.	.	.	.
Alig confidence															.	.	.	.	.	.																																	.	.														.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		N	F	A	N	T	A	N	V	V	A	V	N	P	.	.	.	.	.	.	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D
Template Known Secondary structure														T	.	.	.	.	.	.	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T									S	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.										.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		N	G	G	N	L	A	R	V	A	S	I	E	M	D	E	C	D	P	R	L	A	N	C	H	I	E	V	A	C	D	V	D	N	.	.	.	.	.	.	.	.	.	P	L	V	G	A	R	G	A	A	.	.	.	.	.	.	.	A	V	F	G	P	Q	K	G	A	T	P	E	M	V	E	E	L	E	Q	G	L	Q
Query Conservation																																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V
Template Known Secondary structure					T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		228	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	K
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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