Job Description P0ABM9 Confidence 99.32% Date Thu Jan 5 11:15:51 GMT 2012 Rank 81 Aligned Residues 165 % Identity 13% Template c3qkyA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd Resolution 2.15 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		P	A	L	L	D	R	A	L	D	P	K	A	D	P	L	N	E	E	E	M	S	R	L	A	L	G	M	R	T	Q	L	Q	K	N	P	G	D	.	.	.	I	E	G	W	I	M	L	G	R	V	G	M	A	L	G	N	A	S	I	A	T	D	A	Y	A	T	A	Y	R	L	D	P	K	N	S	D	A	A	L	G
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.
Template Conservation
Template Sequence		H	S	S	P	Q	E	A	F	E	R	A	M	E	F	Y	N	Q	G	K	Y	D	R	A	I	E	Y	F	K	A	V	F	T	Y	G	R	T	H	E	W	A	A	D	A	Q	F	Y	L	A	R	A	Y	Y	Q	N	K	E	Y	L	L	A	A	S	E	Y	E	R	F	I	Q	I	Y	Q	I	D	P	R	V	P	Q	A
Template Known Secondary structure			S	S														T	T													G	G	G		S		S	T	T															T	T																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		262	.	.	.	.	.	.	.	270	.	.	.	.	.																																																												.	.	.	.	280	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	E	A	L	T	R	S	S	D	P	N	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	G	E	L	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	E	R	A	M	C	Y	Y	K	L	S	P	P	Y	E	L	D	Q	T	D	T	R	K	A	I	E	A	F	Q	L	F	I	D	R	Y	P	N	H	E	L	V	D	D	A	T	Q	K	I	R	E	L	R	A	K	L	A	R	K	Q	Y	E	A	A	R	L	Y	E	R	R	E	L	Y	E	A	A	A	V	T	Y
Template Known Secondary structure																T	T	S																				T	T		T	T																													T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		283	.	.	.	.	.	.	290	.	.														.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	L	V	R	T	D	H	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	V	L	S	M	Y	A	F	N	A	F	E	Q	Q	R	F	G	E	A	V	A	A	W	E	M	M	L	K	L	L	P	A	N	D	T	R	R	A	V	I	E	R	S	I	A	Q	A	M	Q	H	L	S	P	Q	E	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																																																																				.
Template Sequence		E	A	V	F	D	A	Y	P	D	T	P	W	A	D	D	A	L	V	G	A	M	R	A	Y	I	A	Y	A	E	Q	S	V	R	A	R	Q	P	E	R	Y	R	R	A	V	E	L	Y	E	R	L	L	Q	I	F	P	D	S	P	L	L	R	T	A	E	E	L	.	Y	T	R	A	R	Q	R	L	T	E	L	E	G
Template Known Secondary structure									T	T	S	T	T																		T	S		G	G	G																				T	T		T									.													T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.
		350
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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