Job Description P0ABM9 Confidence 99.80% Date Thu Jan 5 11:15:51 GMT 2012 Rank 12 Aligned Residues 195 % Identity 10% Template c3q75A_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide Resolution 2.14 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.																																	.
Query SS confidence																						.																																	.
Query Sequence		P	G	I	V	V	A	L	I	V	A	G	V	S	Y	Y	Q	T	G	N	Y	.	Q	Q	V	K	I	W	Q	Q	A	T	A	Q	A	P	A	L	L	D	R	A	L	D	P	K	A	D	P	L	N	E	E	E	.	M	S	R	L	A	L	G	M	R	T	Q	L	Q	K	N	P	G	D	I	E	G	W	I	M	L	G
Query Conservation																						.																																	.
Alig confidence																						.																																	.
Template Conservation
Template Sequence		E	E	Y	K	D	A	M	D	Y	F	R	A	I	A	A	K	E	E	K	S	E	R	A	L	E	L	T	E	I	I	V	R	M	N	P	A	H	Y	T	V	W	Q	Y	R	F	S	L	L	T	S	L	N	K	S	L	E	D	E	L	R	L	M	N	E	F	A	V	Q	N	L	K	S	Y	Q	V	W	H	H	R	L
Template Known Secondary structure																		T			S															T	T															T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.						.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure										.	.																																			.	.	.	.	.
Query SS confidence										.	.																																			.	.	.	.	.
Query Sequence		R	V	G	M	A	L	G	N	.	.	A	S	I	A	T	D	A	Y	A	T	A	Y	R	L	D	P	K	N	S	D	A	A	L	G	Y	A	E	A	L	T	R	S	S	D	.	.	.	.	.	P	N	D	N	R	L	G	G	E	L	L	R	Q	L	V	R	T	D	H	S	N	I	R	V	L	S	M	Y	A	F	N
Query Conservation										.	.																																			.	.	.	.	.
Alig confidence										.	.																																			.	.	.	.	.
Template Conservation
Template Sequence		L	L	L	D	R	I	S	P	Q	D	P	V	S	E	I	E	Y	I	H	G	S	L	L	P	D	P	K	N	Y	H	T	W	A	Y	L	H	W	L	Y	S	H	F	S	T	L	G	R	I	S	E	A	Q	W	G	S	E	L	D	W	C	N	E	M	L	R	V	D	G	R	N	N	S	A	W	G	W	R	W	Y	L
Template Known Secondary structure										S													T	S	S		T	T																		T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.								.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		A	F	E	Q	Q	R	F	G	E	A	V	A	A	W	E	M	.	.	.	.	.	.	.	M	L	K	L	L	P	A	N	D	T	R	R	A	V	I	E	R	S	I	A	Q	A	M	Q	H	L	S	P
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	S	R	P	G	A	E	T	S	S	R	S	L	Q	D	E	L	I	Y	I	L	K	S	I	H	L	I	P	H	N	V	S	A	W	N	Y	L	R	G	F	L	K	H	F	S	L	P	L	V	P
Template Known Secondary structure			T	T	S	T	T																							T	T															T	T			S	G	G
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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