Job Description P0ABM9 Confidence 99.55% Date Thu Jan 5 11:15:51 GMT 2012 Rank 58 Aligned Residues 175 % Identity 9% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	L	I	V	A	G	V	S	Y	Y	Q	T	G	N	Y	Q	Q	V	K	I	W	Q	Q	A	T	A	Q	A	P	A	L	L	D	R	A	L	D	P	K	A	D	P	L	N	E	E	E	M	S	R	L	A	L	G	M	R	T	Q	L	Q	K	N	P	G	D	I	E	G	W	I	M	L	G	R	V	G	M	A
Query Conservation
Alig confidence																												.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		T	T	F	L	L	M	A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	.	.	.	.	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L	K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A
Template Known Secondary structure															T	T										T	T	.	.	.	.			S														T	T																	T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		235			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		L	.	.	G	N	A	S	I	A	T	D	A	Y	A	T	A	Y	R	L	D	P	K	N	S	D	A	A	L	G	Y	A	E	A	L	T	R	S	S	D	P	N	D	N	R	L	G	G	E	L	L	R	Q	L	V	R	T	D	H	S	N	I	R	V	L	S	M	Y	A	F	N	A	F	E	Q	Q	R	F	G	E	A
Query Conservation			.	.
Alig confidence			.	.																																							.	.	.
Template Conservation																																											.	.	.
Template Sequence		A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	Q	G	R	W	E	.	.	.	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	H	P	E	T	L	I	N	L	V	V	L	S	Q	H	L	G	K	P	P	E	V
Template Known Secondary structure				T	T																S																	T	T				.	.	.														T	T															T	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		313	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	A	A	W	.	E	M	M	L	K	L	L	P	A	N	D	T	R	R	A	V	I	E	R	S
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		T	N	R	Y	L	S	Q	L	K	D	A	H	R	S	H	P	F	I	K	E	Y	R	A	K	E
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions