Job Description P0ABM9 Confidence 96.04% Date Thu Jan 5 11:15:51 GMT 2012 Rank 114 Aligned Residues 134 % Identity 13% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		E	E	E	M	S	R	L	A	L	G	M	R	T	Q	L	Q	K	N	P	G	D	I	E	G	W	I	M	L	G	R	V	G	M	A	L	G	N	A	S	I	A	T	D	A	Y	A	T	.	.	.	.	.	.	.	.	A	Y	R	L	D	P	K	N	S	D	A	A	L	G	Y	A	E	A	L	T	R	S	S	D	P
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		V	G	Q	L	T	L	A	R	D	L	L	T	.	.	.	.	.	D	E	S	A	E	M	K	W	R	A	L	G	D	A	S	L	Q	R	F	N	F	K	L	A	I	E	A	F	T	N	A	H	D	L	E	S	L	F	L	L	H	S	S	F	N	N	K	E	G	L	V	T	L	A	K	D	A	E	T	T	G	K	F
Template Known Secondary structure			T										T	.	.	.	.	.	T																	T	T													T												T	T															T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		665	.	.	.	.	670	.	.	.	.	.	.						.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	N	R	L	G	G	E	L	L	R	Q	L	V	R	T	D	H	S	N	I	R	V	L	S	M	Y	A	F	N	A	F	E	Q	Q	R	F	G	E	A	V	A	A	W	E	M	M	L	K	L	L	P	A	N	D	T	R	R	A	V	I	E	R	S	I	A	Q	A	M	Q	H	L	S	P	Q	E	S	K
Query Conservation
Alig confidence			.	.	.										.	.	.	.	.				.	.	.
Template Conservation			.	.	.										.	.	.	.	.				.	.	.
Template Sequence		N	.	.	.	L	A	F	N	A	Y	W	I	A	.	.	.	.	.	G	D	I	.	.	.	Q	G	A	K	D	L	L	I	K	S	Q	R	F	S	E	A	A	F	L	G	S	T	Y	G	L	G	D	N	E	V	N	D	I	V	T	K	W	K	E	N	L	I	L	N	G	K	N	T	V	S	E	R	V	C
Template Known Secondary structure			.	.	.										.	.	.	.	.	T			.	.	.										T	T												T	T																			T	T	T						T	T
Template Predicted Secondary structure			.	.	.										.	.	.	.	.				.	.	.
Template SS confidence
		740				.	.	.	.	.	.	.	.	.						750	.	.				.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions