Job Description P0ABM9 Confidence 99.88% Date Thu Jan 5 11:15:51 GMT 2012 Rank 3 Aligned Residues 268 % Identity 11% Template c2xpiA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 Resolution 2.60 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	M	I	A	T	D	L	R	Q	K	V	Y	E	L	M	Q	E	G	K	S	K	K	E	I	V	D	Y	M	V	A	R	Y	G	N	F	V	T	Y	D	P	P	L	T	P	L	T	V	L	L	W	V	L	P	V	V	A	I	G	I	G	G	W	V	I	Y	A	R	S	R	R	R	V	R	V	V	P	E	A	F
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		R	F	I	D	V	L	A	I	T	T	K	I	L	E	I	D	P	Y	N	L	D	V	Y	P	L	H	L	A	S	L	H	E	S	G	E	K	N	K	L	Y	L	I	S	N	D	L	V	D	R	H	P	E	K	A	V	T	W	L	A	V	G	I	Y	Y	L	C	V	N	K	I	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T	T			T	T												T																	T	T	S														T	T				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	S	V	P	E	G	K	R	A	G	Y	V	V	Y	L	P	G	I	V	V	A	L	I	V	A	G	V	S	Y	Y	Q	T	G	N	Y	Q	Q	V	K	I	W	Q	Q	A	T	A	Q	A	P	A	L	L	D	R	A	L	D	P	K	A	D	P	L	N	E	E	E	M	S	R	L	A	L	G	M	R	T	Q
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	E	A	R	R	Y	F	S	K	S	S	T	M	D	P	Q	F	G	P	A	W	I	G	F	A	H	S	F	A	I	E	G	E	H	D	Q	A	I	S	A	Y	T	T	A	A	R	L	F	Q	G	T	H	L	P	Y	L	F	L	G	M	Q	H	M	Q	L	G	N	I	L	L	A	N	E	Y	L	Q	S	S
Template Known Secondary structure		.	.	.														T	T																T															T	T	T	T		S														T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.
Query Sequence		L	Q	K	N	P	G	D	I	E	G	W	I	M	L	G	R	V	G	M	A	L	G	N	A	S	I	A	T	D	A	Y	A	T	A	Y	R	L	D	P	K	N	.	.	.	.	.	.	.	S	D	A	A	L	G	Y	A	E	A	L	T	R	S	S	D	P	N	D	N	R	L	G	G	E	L	L	R	Q	L	V	R
Query Conservation																																											.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.																			.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		Y	A	L	F	Q	Y	D	P	L	L	L	N	E	L	G	V	V	A	F	N	K	S	D	M	Q	T	A	I	N	H	F	Q	N	A	L	L	L	V	K	K	T	Q	S	N	E	K	P	W	A	A	T	W	A	N	L	G	H	A	Y	R	K	L	K	M	Y	D	.	.	.	A	A	I	D	A	L	N	Q	G	L	L
Template Known Secondary structure																						T	T																			S				S	G	G	G														T	T				.	.	.
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.				.	.	.	.	.	.	540	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	H	S	N	I	R	V	L	S	M	Y	A	F	N	A	F	E	Q	Q	R	F	G	E	A	V	A	A	W	E	M	M	L	K	L	L	P	A	N	D	T	R	R	A	V	I	E	R	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	T	N	D	A	N	V	H	T	A	I	A	L	V	Y	L	H	K	K	I	P	G	L	A	I	T	H	L	H	E	S	L	A	I	S	P	N	E	I	M	A	S	D	L	L	K	R	A	L
Template Known Secondary structure			S	S																T	T																	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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