Return to main results Retrieve Phyre Job Id

Job DescriptionP0ABM9
Confidence99.75%DateThu Jan 5 11:15:51 GMT 2012
Rank22Aligned Residues189
% Identity14%Templatec1fchB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   157..160.........170.........180.........190.........200.........210.........220.........230......
Predicted Secondary structure 













Query SS confidence 















































































Query Sequence  ALIVAGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALG
Query Conservation          
              
                          
       
   
        
        
Alig confidence 















































































Template Conservation      
      
    
      

   
    
   

           
                             
Template Sequence  PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES
Template Known Secondary structure  TT

TT
TT

TT
T
Template Predicted Secondary structure 








































Template SS confidence 















































































   301........310.........320.........330.........340.........350.........360.........370.........380
 
   237..240.........250...
Predicted Secondary structure 




...............................................................
Query SS confidence 
















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NASIATDAYATAYRLDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation      
      

    ...............................................................
Alig confidence 
















...............................................................
Template Conservation      
                                                                      
    
Template Sequence  LQRQACEILRDWLRYTPAYAHLVTPRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF
Template Known Secondary structure 
TSTTTGGGS



S
TTS

T
Template Predicted Secondary structure 















































































Template SS confidence 















































































   381........390.........400.........410.........420.........430.........440.........450.........460
 
   254.....260.........270.........280.........290.........300.........310.........320.....
Predicted Secondary structure  ........

















Query SS confidence  . . . . . . . .







































































Query Sequence  . . . . . . . . KNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPA
Query Conservation  ........                        
      

   
    
   

           

      
   
 
Alig confidence  ........



















...
















































Template Conservation                              ... 
           
        

           

     

 
 
 
Template Sequence  TAALSVRPNDYLLWNKLGATLANGNQSE. . . EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK
Template Known Secondary structure  TT
TT
TT
...
TT
TT

Template Predicted Secondary structure 



























...























Template SS confidence 















































































   475....480.........490.........500.. .......510.........520.........530.........540.........550.
 
   326...330.........340........
Predicted Secondary structure 

Query SS confidence 






















Query Sequence  NDTRRAVIERSIAQAMQHLSPQE
Query Conservation             
  
        
Alig confidence 






















Template Conservation             
       
  
Template Sequence  SGAMSENIWSTLRLALSMLGQSD
Template Known Secondary structure 




T
GG
Template Predicted Secondary structure 



Template SS confidence 






















   552.......560.........570....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions