 |
Job Description | P0ACV6 | Confidence | 78.87% | Date | Thu Jan 5 11:19:10 GMT 2012 |
Rank | 44 | Aligned Residues | 84 |
% Identity | 15% | Template | c3czxA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; |
PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis
|
Resolution | 1.60 Å |
|
 |
  |   |
149 | 150 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | P | A | W | V | V | S | F | H | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
P | L | A | C | I | E | D | P | R | H | S | E | L | G | E | W | L | A | Q | A | F | E | L | P | L | V | T | S | V | G | Y | E | T | P | G | S | F | G | S | W | . |
. |
. |
. |
. |
C | A | D | L | N | L | H | C | I | T | A | E | F | P | P | I |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   | . | . | . | . | . |
|   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|   |
|
|
|
Template Sequence |   |
G | S | D | V | A | I | E | F | H | T | N | A | A | A | N | K | T | A | T | G | I | E | A | L | S | T | P | K | N | K | R | W | C | Q | V | L | G | K | A | V | A | K | K | T | G | W | K | L | R | G | E | D | G | F | K | P | D | N | A | G | Q | H | S | R | L | A | Y | A | Q | A | G | G | I | V | F | E | P | F | F | I |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |  |
|
| B |
|
| S | S | T | T |
|
|
| B |  |  |  |  |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| B |
| T | B | T | T |  |  |  | G | G | G |
|
|
| T | T |  |  |  |  |  | T | T |
|  |  |  |  |
| S | B | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | D | E | A | S | E | K | Y | L | F | A | M | A | N | L | L | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
Template Sequence |   |
S | N | D | T | D | L | A | L | F | K | T | T | K | W | G | I | C | R |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
149 | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|