Job Description P0ACV6 Confidence 100.00% Date Thu Jan 5 11:19:10 GMT 2012 Rank 8 Aligned Residues 190 % Identity 23% Template c1h8lA_ PDB info PDB header:carboxypeptidase Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882; PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa Resolution 2.6 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.													.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	H	Y	G	R	S	L	L	G	A	P	L	I	W	F	P	A	P	A	A	.	.	.	.	.	.	S	R	E	S	G	L	I	L	A	G	T	H	G	D	E	N	S	S	V	V	T	L	S	C	A	L	R	T	L	T	P	S	L	R	R	.	.	.	.	.	.	.	.	.	.	.	.	H	H	V	V	L	C
Query Conservation																							.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	S	V	G	K	S	V	E	L	R	E	L	Y	V	M	E	I	S	D	N	P	G	I	H	E	A	G	E	P	E	F	K	Y	I	G	N	M	H	G	N	E	V	V	G	R	E	L	L	L	N	L	I	E	Y	L	C	K	N	F	G	T	D	P	E	V	T	D	L	V	Q	S	T	R	I	H	I	M	P	S
Template Known Secondary structure									T	T										S	S	S	T	T				T	T										S	S	T	T																			T	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		V	N	P	D	G	C	Q	L	G	L	.	.	.	.	.	.	.	.	.	R	A	N	A	N	G	V	D	L	N	R	N	F	P	A	A	N	W	K	E	G	E	T	V	Y	R	W	N	S	A	A	E	E	R	D	V	V	L	L	T	G	D	K	P	G	S	E	P	E	T	Q	A	L	C	Q	L	I	H	R	I	Q
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	P	D	G	Y	E	K	S	Q	E	G	D	R	G	G	T	V	G	R	N	N	S	N	N	Y	D	L	N	R	N	F	P	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	Q	V	T	D	P	P	Q	P	E	T	L	A	V	M	S	W	L	K	T	Y	P
Template Known Secondary structure		S							T			T	T		S	S			T	T	T	S		T	T	S			G	G	G		S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				S																S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																							.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.															.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																								.	190	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	W	V	V	S	F	H	D	P	L	A	C	I	E	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	S	E	L	G	E	W	L	A	Q	A	F	E	L	P	L	V	T	S	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	T	P
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	L	S	A	N	L	H	G	G	S	L	V	V	N	Y	P	F	D	D	D	E	Q	G	I	A	I	Y	S	K	S	P	D	D	A	V	F	Q	Q	L	A	L	S	Y	S	K	E	N	K	K	M	Y	Q	G	S	P	C	K	D	L	Y	P	T	E	Y	F	P	H	G	I	T	N	G	A	Q	W	Y	N	V	P
Template Known Secondary structure											S							S		S			T	T		S	S	S					T	T													T	T	S					T	T		S		T	T	T	S	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		193	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	S	F	G	S	W	C	A	.	D	L	N	L	H	C	I	T	A	E	F	P	P	I	S	S	D	E	A	S	E	K	Y	L	F	A	M	A	N
Query Conservation										.
Alig confidence										.													.
Template Conservation																							.
Template Sequence		G	G	M	Q	D	W	N	Y	L	N	T	N	C	F	E	V	T	I	E	L	G	.	C	V	K	Y	P	K	A	E	E	L	P	K	Y	W	E	Q
Template Known Secondary structure		S										S	S										.	S		S	S			G	G	G
Template Predicted Secondary structure																							.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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