Job Description P27129 Confidence 18.35% Date Thu Jan 5 11:43:17 GMT 2012 Rank 22 Aligned Residues 190 % Identity 16% Template d1s4na_ SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Glycolipid 2-alpha-mannosyltransferase Resolution 2.01

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																									.													.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.													.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	Y	G	V	D	A	N	Y	L	D	G	V	G	V	S	I	T	S	I	V	L	N	.	N	R	H	I	N	L	D	F	Y	I	I	A	.	D	V	Y	N	D	G	F	F	Q	K	I	A	K	L	A	E	Q	N	Q	L	R	I	T	L	Y	R	I	N	T	D	K	L	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.													.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																									.													.																.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.
Template Sequence		Y	V	T	L	V	R	N	K	E	L	K	G	L	L	S	S	I	K	Y	V	E	N	K	I	N	K	K	F	P	Y	P	W	V	F	L	N	D	E	P	F	T	E	E	F	K	E	A	V	T	K	A	V	.	.	.	S	S	E	V	K	F	G	I	L	P	K	E	H	W	S	Y	P	E	W	I	N	Q	T	K	A
Template Known Secondary structure								G	G	G															T	T	T	T	S									S	S															.	.	.	S	S									G	G	G	S	S			T	T	S
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
											98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	C	L	P	C	T	Q	V	W	S	R	A	M	Y	F	R	L	F	A	F	.	.	.	.	.	Q	L	L	G	L	T	L	D	R	L	L	Y	L	D	A	D	V	V	C	K	G	D	I	.	.	S	Q	L	L	H	L	G	L	N	G	A	V	A	A	V	V	K	D	V	E	P	M
Query Conservation		.	.	.	.	.	.	.	.	.																				.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.				.																				.	.
Template Conservation																																						.
Template Sequence		A	E	I	R	A	D	A	A	T	K	Y	I	Y	G	G	S	E	S	Y	R	H	M	C	R	Y	Q	S	G	F	F	W	R	H	E	L	L	.	E	E	Y	D	W	Y	W	R	V	E	P	D	I	K	L	Y	C	D	I	N	Y	D	V	F	K	W	M	Q	E	N	E	K	V	Y	G	F	T	V	S	I	H	E	Y
Template Known Secondary structure									T	T	T	S	T	T	T	T														T	G	G	G	S	G	G	G	.	T	T		S							T	T					S				S									T	T						S
Template Predicted Secondary structure																																						.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		162	.	.	.	.	.	.	.																											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Query Sequence		Q	E	K	A	V	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	P	E	L	L	G	Q	Y	F	N	S	G	V	V	Y	L	D	L	K	K	W	A	D	A	K	L	T	E	K	A	L	S	I	L	M	S	K	D	N	V	Y	K	.	.	Y
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																				.	.
Template Conservation																																																											.
Template Sequence		E	V	T	I	P	T	L	W	Q	T	S	M	D	F	I	K	K	N	P	E	Y	L	D	E	N	N	L	M	S	F	L	S	N	D	N	G	K	T	Y	N	L	C	H	F	W	S	N	F	E	I	A	N	L	N	L	W	R	.	S	P	A	Y	R	E	Y	F	D	T	L	D	H	Q	G	G	F	F	Y	E	R	W
Template Known Secondary structure		G	G	G		T	T													G	G	G	S		T	T								S	S	T	T	S	S								T	T	S									T	.	S														T					S
Template Predicted Secondary structure																																																											.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	Q	D	V	M	N	V	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	A	P	V	H	S	I	A	A	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions