Job Description P27129 Confidence 100.00% Date Thu Jan 5 11:43:17 GMT 2012 Rank 6 Aligned Residues 237 % Identity 16% Template c1zctB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycogenin-1; PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp Resolution 2.60 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		S	E	C	L	N	V	A	Y	G	V	D	A	N	Y	L	D	G	V	G	V	S	I	T	S	I	V	L	N	N	R	H	I	N	L	D	F	Y	I	I	A	D	V	Y	N	D	G	F	F	Q	K	I	A	K	L	A	E	Q	N	Q	L	R	I	T	L	Y	R	I	N	T	D	K	L	Q	C	L	P	C	T	.	Q
Query Conservation																																																																																.
Alig confidence																																						.																			.	.	.																					.
Template Conservation																																						.																			.	.	.
Template Sequence		T	D	Q	A	F	V	T	L	T	T	N	D	A	Y	A	K	G	A	L	V	L	G	S	S	L	K	Q	H	R	T	S	R	R	L	A	V	.	L	T	T	P	Q	V	S	D	T	M	R	K	A	L	E	I	V	F	.	.	.	D	E	V	I	T	V	D	I	L	D	S	G	D	S	A	H	L	T	L	M	K	R
Template Known Secondary structure		T	T								S	S																	T	T			S					.				T	T	S													.	.	.	S							T	T	S	T	T	S	T	T
Template Predicted Secondary structure																																						.																			.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	S	R	A	M	Y	F	R	L	F	A	F	Q	L	L	G	L	T	L	D	R	L	L	Y	L	D	A	D	V	V	C	K	G	D	I	S	Q	L	L	H	L	G	L	N	G	A	V	A	A	V	V	K	D	V	E	P	M	Q	E	K	A	V	S	R	L	S	D	P	E	L	L	G	Q	Y	F	N	S	G	V
Query Conservation
Alig confidence																		.	.																										.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																										.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	L	G	V	T	L	T	K	L	H	C	W	S	L	T	.	.	Q	Y	S	K	C	V	F	M	D	A	D	T	L	V	L	A	N	I	D	D	L	F	E	R	E	.	.	.	.	E	L	S	A	A	P	D	P	G	W	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	F	N	S	G	V
Template Known Secondary structure		T	T								G	G	G	G	G		T	.	.	T		S							T	T					S			G	G	G	G	G	S		.	.	.	.	S	S						T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																		.	.																										.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.																130	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	L	D	L	K	K	W	A	D	A	K	L	T	E	K	A	L	S	I	L	M	S	K	D	N	V	Y	K	Y	P	D	Q	D	V	M	N	V	L	L	K	G	M	T	L	F	L	P	R	E	Y	N	T	I	Y	T	I	K	S	E	L	K	D	K	T	H	Q	N	Y	K	K	L	I	T	E	S	T	L	L	I
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		F	V	Y	Q	P	S	V	E	T	Y	N	Q	L	L	H	V	A	S	E	Q	.	.	.	.	.	G	S	F	D	G	G	D	Q	G	L	L	N	T	F	F	N	S	W	A	T	T	D	I	R	K	H	L	P	F	I	Y	N	L	S	S	I	S	I	Y	S	Y	L	P	A	F	K	A	F	G	A	N	A	K	V	V
Template Known Secondary structure																						.	.	.	.	.			T	T	S	S									T	T	T	T	T	T	S		G	G	G	B			G	G	G	S			T	T	G	G	G	T	S								G	G	G
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.														.	.	.	.	.	.	.	290	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	T	G	A	T	K	P	W	H	K	W	A	I	Y	P	S	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	K	I	A	L	E	N	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	F	L	G	Q	T	K	P	W	N	Y	T	Y	D	T	K	T	K	S	V	R	S	E	G	H	D	P	P	Q	F	L	N	V	W	W	D	I	F	T	T	S
Template Known Secondary structure					S	S			G	G	G	S				T	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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